Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.1e-59 233.0 107 100.0
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 5.8e-42 174.1 105 75.2
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 2.2e-41 172.2 102 74.5
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 2.9e-41 171.8 102 75.5
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 1.4e-40 169.5 100 78.0
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.9e-40 169.1 105 72.4
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.9e-40 169.1 103 75.7
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 1.9e-40 169.1 105 71.4
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 2.4e-40 168.7 105 68.6
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 7.1e-40 167.2 100 71.0
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 2.7e-39 165.2 96 75.0
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 3.5e-39 164.9 105 69.5
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 3.5e-39 164.9 100 74.0
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 6.0e-39 164.1 102 70.6
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 1.0e-38 163.3 107 70.1
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 3.0e-38 161.8 101 70.3
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.0e-38 161.8 93 76.3
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 3.0e-38 161.8 96 72.9
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.9e-38 161.4 105 72.4
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 3.9e-38 161.4 100 73.0
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 8.6e-38 160.2 105 69.5
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 8.6e-38 160.2 100 68.0
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 8.6e-38 160.2 104 72.1
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 8.6e-38 160.2 107 69.2
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.1e-37 159.8 103 68.0
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 1.1e-37 159.8 107 69.2
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 1.5e-37 159.5 103 65.0
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.9e-37 159.1 125 60.8
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 2.5e-37 158.7 99 70.7
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 3.3e-37 158.3 100 67.0
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 3.3e-37 158.3 105 69.5
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 3.3e-37 158.3 106 67.0
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 4.3e-37 157.9 105 68.6
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 5.6e-37 157.5 105 65.7
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.6e-36 156.0 99 68.7
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 2.1e-36 155.6 100 65.0
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 2.8e-36 155.2 105 67.6
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 3.6e-36 154.8 103 68.0
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.6e-36 154.8 107 68.2
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 1.1e-35 153.3 106 67.9
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 4.0e-35 151.4 108 62.0
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 4.0e-35 151.4 106 66.0
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 5.2e-35 151.0 107 63.6
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 6.9e-35 150.6 99 69.7
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 9.0e-35 150.2 108 62.0
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 1.5e-34 149.4 104 65.4
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 4.4e-34 147.9 107 63.6
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 4.4e-34 147.9 107 63.6
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.2e-33 145.6 104 64.4
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.2e-33 145.6 104 64.4
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 2.2e-33 145.6 104 61.5
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 2.2e-33 145.6 105 62.9
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 3.8e-33 144.8 104 62.5
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 8.4e-33 143.7 107 60.7
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 1.4e-32 142.9 100 62.0
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.4e-32 142.1 104 63.5
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 2.4e-32 142.1 104 62.5
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 3.2e-32 141.7 105 61.0
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.2e-32 141.4 104 63.5
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 4.2e-32 141.4 141 51.8
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 9.3e-32 140.2 104 62.5
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 1.2e-31 139.8 105 61.0
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-31 139.4 104 62.5
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.6e-31 137.9 104 61.5
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 7.8e-31 137.1 101 62.4
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.7e-30 136.0 106 61.3
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 1.7e-30 136.0 106 60.4
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 3.0e-30 135.2 109 56.9
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 8.7e-30 133.7 107 56.1
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 8.7e-30 133.7 77 74.0
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 8.7e-30 133.7 107 57.9
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 1.1e-29 133.3 107 56.1
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 1.1e-29 133.3 92 60.9
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 1.5e-29 132.9 106 58.5
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.9e-29 132.5 102 57.8
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 1.9e-29 132.5 81 71.6
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 3.3e-29 131.7 102 56.9
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.3e-29 131.7 112 58.9
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.3e-29 131.7 77 74.0
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 7.3e-29 130.6 77 74.0
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 9.6e-29 130.2 104 59.6
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 9.6e-29 130.2 108 58.3
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.3e-28 129.8 87 64.4
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.6e-28 129.4 105 55.2
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 2.1e-28 129.0 107 56.1
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 4.8e-28 127.9 102 55.9
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 6.2e-28 127.5 107 56.1
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 6.2e-28 127.5 105 61.0
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 8.1e-28 127.1 105 51.4
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 2.4e-27 125.6 87 63.2
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.1e-27 125.2 97 54.6
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 3.1e-27 125.2 97 54.6
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 5.3e-27 124.4 126 48.4
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 6.9e-27 124.0 105 59.0
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 2.0e-26 122.5 76 72.4
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.6e-26 122.1 88 61.4
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 4.5e-26 121.3 75 73.3
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 7.6e-26 120.6 119 48.7
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 2.9e-25 118.6 75 68.0
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 3.8e-25 118.2 124 48.4
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 4.9e-25 117.9 118 49.2
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 4.9e-25 117.9 124 46.0
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 4.9e-25 117.9 77 68.8
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 8.4e-25 117.1 124 47.6
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 8.4e-25 117.1 124 47.6
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.9e-24 115.9 74 68.9
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 4.2e-24 114.8 71 71.8
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 4.2e-24 114.8 93 52.7
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 1.2e-23 113.2 85 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.3e-22 109.0 92 50.0
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 3.9e-22 108.2 75 61.3
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 1.1e-21 106.7 54 83.3
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 2.5e-21 105.5 70 68.6
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 3.3e-21 105.1 69 69.6
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.8e-20 102.1 70 61.4
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 3.7e-20 101.7 70 62.9
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 6.2e-20 100.9 72 66.7
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 6.9e-19 97.4 74 63.5
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 1.5e-18 96.3 77 55.8
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 1.7e-17 92.8 67 61.2
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 3.2e-16 88.6 49 73.5
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 1.6e-15 86.3 105 40.0
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 3.0e-14 82.0 124 38.7
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 3.1e-11 72.0 88 34.1
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 4.0e-11 71.6 40 82.5
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 4.5e-10 68.2 45 66.7
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 1.4e-08 63.2 37 73.0


User provided reference genes

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