Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.6e-132 474.9 246 100.0
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.8e-118 429.5 225 99.1
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 5.0e-89 331.6 230 73.9
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.9e-88 329.7 232 75.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.1e-87 326.2 231 74.5
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-86 323.6 231 73.6
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.4e-86 323.6 229 74.7
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 4.0e-86 322.0 229 74.2
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 8.8e-86 320.9 230 71.7
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.5e-85 320.1 231 73.6
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.7e-85 318.2 249 68.7
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 7.5e-85 317.8 231 71.9
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-84 317.0 231 73.2
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-84 317.0 231 73.2
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-84 317.0 231 71.9
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.8e-84 315.1 231 71.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 6.3e-84 314.7 229 71.2
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.3e-84 314.7 231 72.3
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.8e-83 313.2 231 72.3
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.4e-83 312.8 231 72.7
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.1e-83 312.0 231 71.0
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 5.3e-83 311.6 231 70.1
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 7.0e-83 311.2 231 71.9
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 9.1e-83 310.8 231 71.0
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.2e-82 310.5 233 70.4
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.6e-82 310.1 232 71.6
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.6e-82 310.1 232 72.0
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.6e-82 310.1 232 71.1
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.5e-82 308.9 235 69.4
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.5e-82 308.9 234 70.5
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.5e-82 308.9 232 69.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 4.5e-82 308.5 231 71.4
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 7.7e-82 307.8 231 70.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.0e-81 307.4 231 70.1
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.7e-81 306.6 233 69.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.7e-81 306.6 231 71.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.2e-81 306.2 231 71.4
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.2e-81 306.2 231 71.4
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.2e-81 306.2 231 70.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.9e-81 305.8 233 68.7
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.9e-81 305.8 231 70.6
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 3.8e-81 305.4 231 71.4
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.0e-81 305.1 231 71.4
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.0e-81 305.1 231 70.6
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 6.5e-81 304.7 231 71.4
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.5e-81 304.7 231 69.3
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 8.5e-81 304.3 230 72.6
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 8.5e-81 304.3 231 69.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.9e-80 303.1 230 71.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.9e-80 303.1 231 69.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 2.5e-80 302.8 234 69.2
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.5e-80 302.8 232 69.8
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 5.5e-80 301.6 232 69.4
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.6e-79 300.1 231 68.4
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.6e-79 300.1 231 68.4
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.1e-79 299.7 232 70.7
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.1e-79 299.7 231 68.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.1e-79 299.7 233 67.0
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.7e-79 299.3 233 69.1
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-79 299.3 232 69.4
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-79 299.3 232 69.4
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.7e-79 299.3 229 69.9
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.6e-79 298.9 233 71.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 6.1e-79 298.1 233 68.2
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.0e-79 297.7 231 70.1
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 8.0e-79 297.7 232 65.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.0e-78 297.4 231 68.8
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.4e-78 297.0 229 68.6
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.0e-78 295.8 231 67.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.8e-78 294.7 232 68.1
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.2e-77 293.9 225 67.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.2e-77 293.9 233 67.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.0e-77 293.1 267 61.4
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.0e-77 293.1 231 67.5
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.0e-77 293.1 232 67.2
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 2.6e-77 292.7 234 67.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.6e-77 292.7 227 69.6
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.6e-77 292.7 231 68.0
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 5.7e-77 291.6 232 69.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 7.5e-77 291.2 240 66.2
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.3e-76 290.4 232 67.2
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.3e-76 290.4 249 63.5
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.7e-76 290.0 232 67.2
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.7e-76 290.0 232 66.8
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.2e-76 289.7 214 69.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.8e-76 289.3 228 68.0
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.8e-76 289.3 232 65.5
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.7e-76 288.9 233 67.0
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 3.7e-76 288.9 232 65.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 4.8e-76 288.5 232 67.7
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 4.8e-76 288.5 232 67.7
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.8e-76 288.5 226 68.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 6.3e-76 288.1 227 67.4
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 6.3e-76 288.1 227 67.4
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.4e-75 287.0 230 67.8
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.4e-75 287.0 230 66.5
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 4.1e-75 285.4 227 67.0
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 5.4e-75 285.0 233 67.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 7.0e-75 284.6 231 67.1
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 9.1e-75 284.3 229 66.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 1.6e-74 283.5 231 64.5
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.7e-74 282.7 230 66.5
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 5.9e-74 281.6 235 66.0
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 7.7e-74 281.2 226 68.1
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 7.7e-74 281.2 244 65.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.7e-73 280.0 229 65.5
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.7e-73 280.0 226 67.3
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.8e-73 278.9 227 65.2
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 3.8e-73 278.9 222 67.1
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 6.5e-73 278.1 231 62.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 6.5e-73 278.1 224 66.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.5e-72 276.9 234 64.5
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 4.2e-72 275.4 182 75.3
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 5.5e-72 275.0 174 75.9
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 6.1e-71 271.6 225 66.2
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 3.0e-70 269.2 227 64.8
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 3.0e-70 269.2 227 63.4
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.2e-69 267.3 237 60.8
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 2.6e-69 266.2 230 63.9
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.6e-69 266.2 170 75.3
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.8e-68 262.7 227 61.7
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 4.9e-68 261.9 234 59.4
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 8.3e-68 261.2 187 74.9
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.7e-66 256.1 229 59.8
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.3e-65 253.8 227 58.1
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.6e-65 251.5 252 57.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.1e-64 250.8 165 73.3
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.1e-63 246.5 206 62.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.0e-62 244.2 198 66.7
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.4e-62 243.8 231 61.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.7e-60 236.9 230 59.6
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.2e-60 236.5 187 67.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.8e-59 233.4 176 63.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.8e-59 233.4 218 55.5
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 7.0e-59 231.5 164 67.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.2e-59 231.1 179 62.6
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 4.6e-58 228.8 160 70.6
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 2.8e-55 219.5 153 73.2
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.0e-54 217.6 237 52.7
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.9e-51 206.8 165 65.5
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.7e-50 203.0 155 66.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.7e-49 200.3 181 60.8
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 7.3e-48 194.9 127 76.4
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.2e-44 183.3 124 74.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.4e-43 179.9 161 52.8
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 3.6e-39 166.0 161 58.4
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.4e-38 164.1 160 51.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.4e-37 159.5 176 46.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.0e-30 136.0 190 37.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 5.8e-21 105.5 153 49.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.1e-11 74.7 58 63.8


User provided reference genes

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