Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003770 Simmondsia chinensis HOM05D003269 ORTHO05D003672 1.9e-43 178.7 88 100.0
TAR629G3156 Trochodendron aralioides HOM05D003269 ORTHO05D003672 5.1e-12 74.3 82 47.6
ATR0564G272 Amborella trichopoda HOM05D003269 ORTHO05D003672 6.7e-12 73.9 60 58.3
Aqoxy3G03359 Aquilegia oxysepala HOM05D003269 ORTHO05D003672 1.5e-11 72.8 70 45.7
MBI05_g35448_MAGBIO Magnolia biondii HOM05D003269 ORTHO05D003672 2.5e-11 72.0 63 55.6
EL10Ac9g21022 Beta vulgaris HOM05D003269 ORTHO05D003672 7.4e-11 70.5 70 51.4
CiPaw.03G196000 Carya illinoinensis HOM05D003269 ORTHO05D003672 1.1e-09 66.6 66 47.0
Sc21g0004410 Simmondsia chinensis HOM05D003269 ORTHO05D003672 1.1e-09 66.6 57 61.4
Nn6g34433 Nelumbo nucifera HOM05D003269 ORTHO05D003672 1.4e-09 66.2 67 46.3
QL08p043364 Quercus lobata HOM05D003269 ORTHO05D003672 1.8e-09 65.9 60 51.7
AUR62024006 Chenopodium quinoa HOM05D003269 ORTHO05D003672 2.4e-09 65.5 60 46.7
MSTRG.14301 Avicennia marina HOM05D003269 ORTHO05D003672 6.9e-09 63.9 71 49.3
Dinv06273 Davidia involucrata HOM05D003269 ORTHO05D003672 6.9e-09 63.9 63 49.2
GSVIVG01020789001 Vitis vinifera HOM05D003269 ORTHO05D003672 6.9e-09 63.9 60 53.3
Lsat_1_v5_gn_8_31860 Lactuca sativa HOM05D003269 ORTHO05D003672 9.1e-09 63.5 68 45.6
Potri.012G059000 Populus trichocarpa HOM05D003269 ORTHO05D003672 9.1e-09 63.5 60 51.7
Gohir.A09G003900 Gossypium hirsutum HOM05D003269 ORTHO05D003672 1.2e-08 63.2 70 47.1
Gohir.D09G003500 Gossypium hirsutum HOM05D003269 ORTHO05D003672 1.2e-08 63.2 70 47.1
Gorai.006G004800 Gossypium raimondii HOM05D003269 ORTHO05D003672 1.2e-08 63.2 70 47.1
CDE09G1426 Ceratophyllum demersum HOM05D003269 ORTHO05D003672 2.0e-08 62.4 63 49.2
FvH4_6g37640 Fragaria vesca HOM05D003269 ORTHO05D003672 2.0e-08 62.4 63 47.6
FAN05G2200 Fragaria x ananassa HOM05D003269 ORTHO05D003672 2.0e-08 62.4 63 47.6
FAN09G2970 Fragaria x ananassa HOM05D003269 ORTHO05D003672 2.0e-08 62.4 63 47.6
FAN14G0221 Fragaria x ananassa HOM05D003269 ORTHO05D003672 2.0e-08 62.4 69 47.8
Solyc07g055830.3 Solanum lycopersicum HOM05D003269 ORTHO05D003672 2.0e-08 62.4 63 46.0
Sopen07g029200 Solanum pennellii HOM05D003269 ORTHO05D003672 2.0e-08 62.4 75 38.7
Thecc.01G158000 Theobroma cacao HOM05D003269 ORTHO05D003672 2.0e-08 62.4 70 47.1
CSS0013112 Camellia sinensis var. sinensis HOM05D003269 ORTHO05D003672 2.6e-08 62.0 63 47.6
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.6e-08 62.0 77 42.9
Cpa.g.sc50.62 Carica papaya HOM05D003269 ORTHO05D003672 3.4e-08 61.6 63 52.4
AUR62031795 Chenopodium quinoa HOM05D003269 ORTHO05D003672 3.4e-08 61.6 60 43.3
RcHm_v2.0_Chr2g0150641 Rosa chinensis HOM05D003269 ORTHO05D003672 4.5e-08 61.2 61 47.5
CANSAT64G0322 Cannabis sativa HOM05D003269 ORTHO05D003672 5.9e-08 60.8 63 47.6
PGSC0003DMG400017292 Solanum tuberosum HOM05D003269 ORTHO05D003672 5.9e-08 60.8 63 44.4
Actinidia11179 Actinidia chinensis HOM05D003269 ORTHO05D003672 7.7e-08 60.5 63 46.0
ECA233G5071 Erigeron canadensis HOM05D003269 ORTHO05D003672 7.7e-08 60.5 63 46.0
Lalb_Chr15g0080841 Lupinus albus HOM05D003269 ORTHO05D003672 7.7e-08 60.5 63 46.0
DCAR_013292 Daucus carota HOM05D003269 ORTHO05D003672 1.0e-07 60.1 69 42.0
Migut.H02112 Erythranthe guttata HOM05D003269 ORTHO05D003672 3.8e-07 58.2 72 44.4
Manes.02G087000 Manihot esculenta HOM05D003269 ORTHO05D003672 5.0e-07 57.8 63 44.4
CAN.G1481.13 Capsicum annuum HOM05D003269 ORTHO05D003672 6.5e-07 57.4 63 42.9
Cc05_g09140 Coffea canephora HOM05D003269 ORTHO05D003672 6.5e-07 57.4 59 45.8
SalBow7G2023 Salvia bowleyana HOM05D003269 ORTHO05D003672 8.5e-07 57.0 59 44.1
HanXRQChr12g0367501 Helianthus annuus HOM05D003269 ORTHO05D003672 1.4e-06 56.2 77 44.2
Rhsim06G0124100 Rhododendron simsii HOM05D003269 ORTHO05D003672 1.4e-06 56.2 77 39.0
VMungo0540G0900 Vigna mungo HOM05D003269 ORTHO05D003672 1.4e-06 56.2 63 44.4
Phvul.006G036100 Phaseolus vulgaris HOM05D003269 ORTHO05D003672 1.9e-06 55.8 63 46.0
vmacro12421 Vaccinium macrocarpon HOM05D003269 ORTHO05D003672 1.9e-06 55.8 49 51.0
Ca_14631_v3 Cicer arietinum L. HOM05D003269 ORTHO05D003672 2.5e-06 55.5 63 42.9
Glyma.08G311300 Glycine max HOM05D003269 ORTHO05D003672 2.5e-06 55.5 63 44.4
Medtr3g048940 Medicago truncatula HOM05D003269 ORTHO05D003672 2.5e-06 55.5 63 42.9
Prupe.3G169700 Prunus persica HOM05D003269 ORTHO05D003672 2.5e-06 55.5 82 40.2
HPP92_006023 Vanilla planifolia HOM05D003269 ORTHO05D003672 2.5e-06 55.5 64 43.8
Atru.chr6.3560 Acer truncatum HOM05D003269 ORTHO05D003672 3.2e-06 55.1 63 42.9
SalBow7G0715 Salvia bowleyana HOM05D003269 ORTHO05D003672 3.2e-06 55.1 58 43.1


User provided reference genes

Program Settings