Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003730 Simmondsia chinensis HOM05D000176 ORTHO05D000106 2.9e-185 651.7 327 100.0
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 1.9e-51 207.2 403 39.0
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 4.6e-50 202.6 339 38.6
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 1.5e-48 197.6 381 36.5
Haze_13472 Corylus avellana HOM05D000176 ORTHO05D000106 9.1e-46 188.3 300 38.3
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 2.9e-44 183.3 452 33.4
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 3.8e-44 183.0 468 32.3
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 3.2e-43 179.9 468 32.1
DCAR_021305 Daucus carota HOM05D000176 ORTHO05D000106 5.5e-43 179.1 241 41.5
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 2.9e-36 156.8 467 27.6
Cfa003570 Carpinus fangiana HOM05D000176 ORTHO05D000106 8.8e-33 145.2 168 45.2
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-32 144.4 282 35.1
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-32 144.4 282 35.1
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 3.3e-32 143.3 383 30.8
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 4.4e-32 142.9 383 29.2
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 5.7e-32 142.5 278 34.5
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-31 140.6 277 33.9
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.8e-31 140.2 288 32.6
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 2.8e-31 140.2 292 33.2
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 3.7e-31 139.8 381 30.2
COL.COLO4_33030 Corchorus olitorius HOM05D000176 ORTHO05D000106 1.4e-30 137.9 435 27.8
SGA_v2.0_scaffold105G30307 Striga asiatica HOM05D000176 ORTHO05D000106 2.4e-30 137.1 113 54.0
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 3.1e-30 136.7 444 26.1
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 3.1e-30 136.7 289 34.3
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 4.1e-30 136.3 285 33.0
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 9.1e-30 135.2 291 33.0
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 1.2e-29 134.8 345 31.3
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.6e-29 134.4 283 33.2
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.6e-29 134.4 283 33.2
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.6e-29 134.4 270 33.7
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 2.0e-29 134.0 329 31.0
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 2.0e-29 134.0 284 32.7
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 2.6e-29 133.7 268 34.0
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 3.5e-29 133.3 389 30.1
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.5e-29 132.9 291 32.6
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 7.7e-29 132.1 335 29.0
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 7.7e-29 132.1 268 32.8
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 7.7e-29 132.1 388 30.4
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 2.2e-28 130.6 345 29.9
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 2.9e-28 130.2 334 29.0
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 2.9e-28 130.2 283 33.9
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 6.5e-28 129.0 339 32.2
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 8.5e-28 128.6 391 29.4
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 1.9e-27 127.5 262 33.6
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 1.9e-27 127.5 280 33.2
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 2.5e-27 127.1 377 28.6
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 2.5e-27 127.1 331 30.2
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 3.2e-27 126.7 268 34.0
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 3.2e-27 126.7 270 31.9
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 7.2e-27 125.6 389 29.0
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 9.4e-27 125.2 472 27.3
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 9.4e-27 125.2 280 32.1
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 2.1e-26 124.0 270 31.5
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 6.1e-26 122.5 338 29.9
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 1.8e-25 120.9 354 29.1
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 3.0e-25 120.2 267 31.8
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 4.0e-25 119.8 388 29.1
Cfa021595 Carpinus fangiana HOM05D000176 ORTHO05D000106 5.2e-25 119.4 170 43.5
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 1.2e-24 118.2 413 28.6
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 3.4e-24 116.7 390 26.4
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 5.7e-24 115.9 379 28.0
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 1.1e-22 111.7 280 30.7
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 2.4e-22 110.5 77 64.9
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 4.1e-22 109.8 288 30.2
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 2.0e-21 107.5 334 25.7
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 4.5e-21 106.3 57 77.2
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 2.9e-20 103.6 57 75.4
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 2.9e-20 103.6 57 75.4
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 2.9e-20 103.6 57 75.4
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 2.9e-20 103.6 57 75.4
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 3.8e-20 103.2 57 71.9
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 6.5e-20 102.4 57 70.2
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 6.5e-20 102.4 130 43.1
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.5e-19 101.3 104 48.1
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.5e-19 101.3 57 71.9
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 1.5e-19 101.3 57 71.9
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 3.2e-19 100.1 65 64.6
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 4.2e-19 99.8 57 70.2
Psat3g039360 Pisum sativum HOM05D000176 ORTHO05D000106 8.0e-18 95.5 130 41.5
SGA_v2.0_scaffold4221G54449 Striga asiatica HOM05D000176 ORTHO05D000106 2.3e-17 94.0 146 41.8
Actinidia28384 Actinidia chinensis HOM05D000176 ORTHO05D000106 5.2e-17 92.8 142 41.5
TPR.G19280 Trifolium pratense HOM05D000176 ORTHO05D000106 3.4e-16 90.1 148 34.5
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 1.4e-14 84.7 65 55.4
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 1.4e-14 84.7 65 52.3
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 1.8e-14 84.3 279 26.2
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 7.0e-14 82.4 112 41.1
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 9.1e-14 82.0 57 66.7
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.2e-13 81.6 186 30.1
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 2.7e-13 80.5 112 37.5
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 1.3e-12 78.2 65 47.7
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 1.3e-12 78.2 112 37.5
Dinv05007 Davidia involucrata HOM05D000176 ORTHO05D000106 6.6e-12 75.9 191 30.9
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 8.6e-12 75.5 65 55.4
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 4.2e-11 73.2 61 49.2
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 5.6e-11 72.8 65 47.7
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.6e-10 71.2 68 48.5
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.6e-10 71.2 68 48.5
Psat4g187840 Pisum sativum HOM05D000176 ORTHO05D000106 3.6e-10 70.1 65 52.3
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 1.8e-09 67.8 57 59.6
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.8e-09 67.8 65 50.8
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 2.3e-09 67.4 68 45.6
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 3.0e-09 67.0 65 47.7
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.2e-08 65.1 56 53.6
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 1.2e-08 65.1 65 47.7
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 2.0e-08 64.3 57 56.1
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 2.0e-08 64.3 57 56.1
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 2.0e-08 64.3 56 57.1
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 2.0e-08 64.3 56 57.1
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 2.6e-08 63.9 65 46.2
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 2.6e-08 63.9 56 57.1
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 2.6e-08 63.9 56 57.1
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.4e-08 63.5 57 56.1
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 4.4e-08 63.2 57 54.4
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 5.7e-08 62.8 57 54.4
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 7.5e-08 62.4 56 55.4
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 3.7e-07 60.1 56 53.6
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.4e-06 58.2 56 51.8
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.4e-06 58.2 56 51.8
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 1.4e-06 58.2 56 51.8
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 3.2e-06 57.0 56 50.0
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 3.2e-06 57.0 56 50.0
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 3.2e-06 57.0 56 50.0
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 4.1e-06 56.6 56 50.0
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 4.1e-06 56.6 56 50.0


User provided reference genes

Program Settings