Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003690 Simmondsia chinensis HOM05D000380 ORTHO05D389032 4.5e-101 371.3 196 100.0
Sc12g0003670 Simmondsia chinensis HOM05D000380 ORTHO05D000561 1.2e-08 64.3 88 52.3
CiPaw.09G073000 Carya illinoinensis HOM05D000380 ORTHO05D000561 5.9e-08 62.0 88 50.0
CiPaw.10G061700 Carya illinoinensis HOM05D000380 ORTHO05D000561 1.3e-07 60.8 88 48.9
ECA233G3810 Erigeron canadensis HOM05D000380 ORTHO05D000561 1.3e-07 60.8 88 48.9
Peaxi162Scf00469g00632 Petunia axillaris HOM05D000380 ORTHO05D000561 1.7e-07 60.5 88 52.3
Prupe.3G113100 Prunus persica HOM05D000380 ORTHO05D000561 1.7e-07 60.5 88 48.9
QL05p049831 Quercus lobata HOM05D000380 ORTHO05D000561 2.2e-07 60.1 88 48.9
Eucgr.A01931 Eucalyptus grandis HOM05D000380 ORTHO05D000561 2.9e-07 59.7 88 48.9
Potri.004G061500 Populus trichocarpa HOM05D000380 ORTHO05D000561 2.9e-07 59.7 118 41.5
Sabra04G0040800 Salix brachista HOM05D000380 ORTHO05D000561 2.9e-07 59.7 118 41.5
Aqoxy4G00229 Aquilegia oxysepala HOM05D000380 ORTHO05D000561 3.8e-07 59.3 88 47.7
Haze_06175 Corylus avellana HOM05D000380 ORTHO05D000561 3.8e-07 59.3 88 47.7
SGA_v2.0_scaffold9G04857 Striga asiatica HOM05D000380 ORTHO05D000561 3.8e-07 59.3 88 48.9
Atru.chr10.1565 Acer truncatum HOM05D000380 ORTHO05D000561 5.0e-07 58.9 96 43.8
HanXRQChr17g0559631 Helianthus annuus HOM05D000380 ORTHO05D000561 5.0e-07 58.9 88 47.7
Nitab4.5_0008683g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 5.0e-07 58.9 88 47.7
Peaxi162Scf00202g00187 Petunia axillaris HOM05D000380 ORTHO05D000561 5.0e-07 58.9 88 47.7
Sed0022858 Sechium edule HOM05D000380 ORTHO05D000561 5.0e-07 58.9 88 46.6
CAN.G724.1 Capsicum annuum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 89 49.4
Dinv08372 Davidia involucrata HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Glyma.06G275600 Glycine max HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Glyma.12G129800 Glycine max HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
MD09G1234800 Malus domestica HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Nitab4.5_0002027g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Nitab4.5_0004937g0080 Nicotiana tabacum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Nitab4.5_0005922g0010 Nicotiana tabacum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 50.0
Solyc02g072150.3 Solanum lycopersicum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Sopen02g021110 Solanum pennellii HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
PGSC0003DMG400028467 Solanum tuberosum HOM05D000380 ORTHO05D000561 6.5e-07 58.5 88 47.7
Cc02_g15630 Coffea canephora HOM05D000380 ORTHO05D000561 8.5e-07 58.2 88 46.6
Lj3g0019561 Lotus japonicus HOM05D000380 ORTHO05D000561 8.5e-07 58.2 88 47.7
TWI53G0189 Tripterygium wilfordii HOM05D000380 ORTHO05D000561 8.5e-07 58.2 88 46.6
arahy.Tifrunner.gnm1.ann1.FTDL1P Arachis hypogaea HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
arahy.Tifrunner.gnm1.ann1.RIH8EG Arachis hypogaea HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
Cpa.g.sc7.119 Carica papaya HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
Cfa000654 Carpinus fangiana HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
ClCG01G023920 Citrullus lanatus HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
Gohir.A10G034500 Gossypium hirsutum HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
Gorai.011G037000 Gossypium raimondii HOM05D000380 ORTHO05D000561 1.1e-06 57.8 88 46.6
MSTRG.15080 Avicennia marina HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
CSS0038622 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
MELO3C007197.2 Cucumis melo HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
MELO3C018715.2 Cucumis melo HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 47.7
CsaV3_6G051060 Cucumis sativus L. HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
CsaV3_7G005770 Cucumis sativus L. HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 47.7
Migut.H02136 Erythranthe guttata HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 47.7
Migut.M00239 Erythranthe guttata HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 47.7
Gohir.D10G035200 Gossypium hirsutum HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 45.5
Lsat_1_v5_gn_8_142361 Lactuca sativa HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
Rhsim02G0149100 Rhododendron simsii HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 47.7
THA.LOC104826229 Tarenaya hassleriana HOM05D000380 ORTHO05D000561 1.4e-06 57.4 88 46.6
Lalb_Chr03g0030021 Lupinus albus HOM05D000380 ORTHO05D000561 1.9e-06 57.0 88 46.6
TAR629G1589 Trochodendron aralioides HOM05D000380 ORTHO05D000561 1.9e-06 57.0 88 46.6
AL1G16420 Arabidopsis lyrata HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
AT1G06410 Arabidopsis thaliana HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
Carub.0001s0576 Capsella rubella HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
CAN.G1360.11 Capsicum annuum HOM05D000380 ORTHO05D000561 2.5e-06 56.6 96 49.0
Ca_03836_v3 Cicer arietinum L. HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
Thhalv10006783m.g Eutrema salsugineum HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
FvH4_6g27760 Fragaria vesca HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 46.6
FAN02G3202 Fragaria x ananassa HOM05D000380 ORTHO05D010349 2.5e-06 56.6 88 46.6
FAN05G4398 Fragaria x ananassa HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 46.6
FAN14G4650 Fragaria x ananassa HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 46.6
Sp1g05170 Schrenkiella parvula HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 45.5
Sed0010912 Sechium edule HOM05D000380 ORTHO05D000561 2.5e-06 56.6 88 47.7
CAN.G411.49 Capsicum annuum HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 45.5
COL.COLO4_31226 Corchorus olitorius HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 45.5
Potri.011G070900 Populus trichocarpa HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 46.6
Sabra11G0055400 Salix brachista HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 46.6
Sabra11G0058500 Salix brachista HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 46.6
vmacro16021 Vaccinium macrocarpon HOM05D000380 ORTHO05D000561 3.2e-06 56.2 88 47.7
BcaB03g13419 Brassica carinata HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
A08p35990 Brassica napus HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
BraA08t35506Z Brassica rapa HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
CSS0007698 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
CSS0015171 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
ClCG07G002600 Citrullus lanatus HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 46.6
Cc05_g08600 Coffea canephora HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 47.7
Duzib192G0790 Durio zibethinus HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 46.6
Lalb_Chr19g0134851 Lupinus albus HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
Nn3g21080 Nelumbo nucifera HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
Phvul.011G127700 Phaseolus vulgaris HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 45.5
Solyc07g055300.3 Solanum lycopersicum HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 47.7
Sopen07g026920 Solanum pennellii HOM05D000380 ORTHO05D000561 4.2e-06 55.8 88 47.7
BcaC07g36809 Brassica carinata HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
C08p02570 Brassica napus HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
BolC8t47051H Brassica oleracea HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
HanXRQChr04g0111821 Helianthus annuus HOM05D000380 ORTHO05D000561 5.5e-06 55.5 91 45.1
Psat7g164160 Pisum sativum HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
PGR042G0093 Punica granatum HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 44.3
Sed0020558 Sechium edule HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 44.3
Solyc10g007950.4 Solanum lycopersicum HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
Sopen10g003820 Solanum pennellii HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
TAR627G0991 Trochodendron aralioides HOM05D000380 ORTHO05D000561 5.5e-06 55.5 88 45.5
GSVIVG01021260001 Vitis vinifera HOM05D000380 ORTHO05D000561 5.5e-06 55.5 79 46.8
RcHm_v2.0_Chr2g0131021 Rosa chinensis HOM05D000380 ORTHO05D000561 7.2e-06 55.1 88 44.3
Hund09810 Selenicereus undatus HOM05D000380 ORTHO05D000561 7.2e-06 55.1 88 46.6
Sc05g0006860 Simmondsia chinensis HOM05D000380 ORTHO05D000561 7.2e-06 55.1 88 46.6
MSTRG.6778 Avicennia marina HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
CARHR006020 Cardamine hirsuta HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 44.3
AUR62028210 Chenopodium quinoa HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
Ciclev10014248m.g Citrus clementina HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
Duzib235G0073 Durio zibethinus HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
MD00G1008700 Malus domestica HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
MD10G1275100 Malus domestica HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
Os01g0749400 Oryza sativa ssp. japonica HOM05D000380 ORTHO05D000561 9.4e-06 54.7 94 42.6
PSO170G0362 Papaver somniferum HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
PSO782G4219 Papaver somniferum HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 45.5
PGSC0003DMG400017276 Solanum tuberosum HOM05D000380 ORTHO05D000561 9.4e-06 54.7 88 47.7


User provided reference genes

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