Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1556.6 798 100.0
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.4e-302 1042.7 800 68.1
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 1.6e-301 1039.3 800 68.8
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 3.4e-296 1021.5 809 65.8
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 3.2e-294 1015.0 811 65.6
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 6.2e-290 1000.7 807 66.2
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 8.1e-290 1000.3 807 65.4
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 1.1e-289 1000.0 808 65.1
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 1.1e-289 1000.0 807 65.6
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 1.4e-289 999.6 808 65.0
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 1.8e-289 999.2 807 65.3
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 1.6e-285 986.1 810 64.9
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 4.6e-285 984.6 810 64.9
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 5.1e-284 981.1 807 63.6
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 1.5e-283 979.5 803 64.6
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 9.6e-283 976.9 807 64.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.3e-282 976.5 800 64.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 1.6e-282 976.1 803 64.1
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 5.3e-281 971.1 759 68.2
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 5.3e-281 971.1 807 64.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 4.5e-280 968.0 805 63.9
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 2.2e-279 965.7 805 62.9
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 8.4e-279 963.8 807 63.9
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 8.4e-279 963.8 804 62.8
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 1.1e-278 963.4 809 63.7
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 1.9e-278 962.6 811 63.4
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.2e-277 959.9 806 63.0
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 2.7e-277 958.7 768 65.2
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 4.6e-277 958.0 805 63.5
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 7.9e-277 957.2 803 63.4
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 7.9e-277 957.2 838 62.1
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.9e-276 954.9 803 63.3
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 3.9e-276 954.9 807 62.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 1.9e-275 952.6 804 62.7
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.3e-274 949.9 803 62.9
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 4.8e-274 948.0 803 63.0
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.1e-273 946.8 766 64.2
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 6.9e-273 944.1 803 62.6
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.2e-272 943.3 817 61.8
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 2.6e-272 942.2 804 62.7
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 8.4e-271 937.2 804 62.1
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.9e-270 936.0 808 61.8
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 3.2e-270 935.3 808 61.6
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.2e-269 933.3 807 61.7
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 3.5e-269 931.8 807 61.7
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 6.0e-269 931.0 808 62.3
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 7.9e-269 930.6 801 62.3
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 1.0e-268 930.2 814 61.1
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 3.9e-268 928.3 802 61.2
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 6.7e-268 927.5 808 62.9
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 1.1e-267 926.8 806 60.5
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 3.3e-267 925.2 806 60.4
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 6.2e-266 921.0 812 60.6
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 6.2e-266 921.0 808 61.0
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 1.1e-265 920.2 810 61.1
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 1.0e-263 913.7 808 61.0
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.7e-263 912.9 806 60.9
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 2.1e-261 906.0 811 61.3
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 2.7e-261 905.6 807 61.0
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 1.0e-260 903.7 808 59.5
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.0e-260 903.7 804 60.4
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 8.7e-260 900.6 803 60.8
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 9.7e-259 897.1 806 59.2
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 1.6e-258 896.3 806 60.5
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 1.4e-257 893.3 816 59.8
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.4e-257 893.3 804 61.3
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.4e-257 892.5 751 63.4
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 9.0e-257 890.6 811 59.1
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 1.5e-256 889.8 805 59.9
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.8e-255 885.2 806 59.4
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 1.1e-254 883.6 817 58.1
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.0e-252 877.1 815 58.7
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.3e-252 876.7 806 59.3
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.8e-252 876.3 807 59.0
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 5.1e-252 874.8 806 58.9
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 6.7e-252 874.4 807 58.4
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 8.7e-252 874.0 810 58.9
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.1e-251 873.6 809 59.2
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.1e-251 873.6 808 59.2
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.1e-249 865.5 809 58.6
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.0e-248 862.8 807 58.7
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 5.0e-247 858.2 816 58.0
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 1.1e-246 857.1 849 56.2
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.2e-245 853.6 812 57.6
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.7e-243 844.0 748 60.2
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.4e-241 840.1 805 56.5
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.2e-234 816.2 768 58.6
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.4e-228 797.0 806 54.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 3.8e-223 778.9 648 63.6
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 1.9e-222 776.5 807 53.4
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.8e-220 770.0 798 51.5
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 2.0e-216 756.5 806 50.2
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 5.7e-211 738.4 801 51.8
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 7.0e-209 731.5 803 49.8
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 1.6e-208 730.3 798 52.4
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.8e-207 725.7 688 58.6
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 2.6e-195 686.4 750 50.1
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 4.1e-185 652.5 767 49.5
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 6.4e-162 575.5 521 58.7
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 6.2e-157 558.9 741 44.7
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 2.3e-143 513.8 434 61.3
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.2e-120 438.3 805 36.5
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 3.1e-116 423.7 780 34.9
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 8.3e-109 399.1 799 35.0
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 2.3e-87 327.8 322 55.9
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.5e-81 308.5 938 27.8
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 1.1e-47 196.1 178 58.4
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.3e-24 119.4 86 68.6
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.5e-14 85.9 62 69.4
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.1e-12 79.7 84 51.2
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.4e-10 72.8 871 20.1
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.4e-10 72.8 56 66.1
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 5.1e-10 70.9 56 62.5
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 2.6e-09 68.6 646 20.7
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 1.1e-07 63.2 97 45.4


User provided reference genes

Program Settings