Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 0.0e+00 1445.6 795 100.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 3.1e-172 609.8 906 44.3
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.1e-160 570.5 769 48.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 4.8e-141 506.1 831 41.2
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.6e-139 500.4 811 44.6
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 6.5e-138 495.7 718 42.5
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.5e-136 490.0 781 41.9
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.3e-134 483.4 648 43.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 5.7e-134 482.6 667 44.8
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 3.7e-133 479.9 721 42.4
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.1e-132 476.5 732 41.5
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.3e-132 476.1 696 41.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.6e-131 473.8 819 39.3
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.6e-131 472.2 754 39.7
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 5.0e-130 469.5 844 40.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.9e-129 467.6 748 38.9
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.4e-124 451.4 830 39.2
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 3.1e-124 450.3 894 34.3
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 5.3e-124 449.5 782 40.4
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.0e-122 443.0 817 40.3
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 6.5e-122 442.6 827 38.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.4e-121 441.4 841 36.6
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 4.2e-121 439.9 796 37.7
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 4.6e-120 436.4 912 36.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.0e-119 433.7 795 39.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 3.0e-119 433.7 842 36.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.1e-119 433.0 770 39.4
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.3e-118 430.3 888 36.4
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.3e-118 430.3 822 36.1
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.7e-117 426.8 747 39.6
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.4e-116 424.1 689 38.5
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.1e-116 423.3 784 38.1
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 5.3e-116 422.9 788 37.7
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 6.9e-116 422.5 788 37.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.9e-113 414.5 787 37.5
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.4e-111 408.3 791 36.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.8e-111 407.9 811 38.8
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.6e-110 404.1 822 36.3
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.3e-110 403.7 820 37.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 9.7e-110 402.1 917 34.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 9.7e-110 402.1 809 36.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 6.3e-109 399.4 742 37.7
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 6.3e-109 399.4 851 38.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 8.2e-109 399.1 765 37.5
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-106 392.1 806 36.6
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.7e-106 391.3 872 35.4
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 2.9e-106 390.6 769 39.0
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.1e-105 388.7 813 34.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.1e-105 388.7 831 36.3
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.9e-105 387.9 982 31.6
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.5e-105 387.5 842 35.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.5e-105 386.3 832 34.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-104 385.2 789 35.4
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.6e-104 384.8 867 35.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.3e-103 380.9 828 36.5
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.1e-102 378.6 808 37.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.0e-102 377.9 777 38.7
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.7e-102 376.3 821 35.6
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.1e-100 372.1 805 34.8
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.4e-100 371.7 821 36.8
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 7.0e-100 369.4 811 34.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 7.0e-100 369.4 694 37.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 2.0e-99 367.9 804 37.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.7e-99 367.5 793 35.1
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.9e-99 366.3 872 34.4
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 5.9e-99 366.3 893 35.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.8e-98 363.6 686 36.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.5e-97 361.7 887 33.7
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-97 361.7 859 33.9
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.2e-97 360.1 828 35.0
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 9.4e-97 359.0 724 35.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.6e-96 358.2 692 35.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.7e-96 356.7 681 36.9
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.8e-95 354.8 604 38.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.7e-93 347.1 677 34.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.8e-92 344.7 689 35.7
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.2e-91 342.0 678 35.4
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.5e-89 335.1 701 34.4
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 9.4e-89 332.4 734 34.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-88 332.0 771 32.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.2e-88 332.0 766 37.5
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.7e-88 330.9 676 34.9
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.4e-87 328.6 684 33.5
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 4.0e-87 327.0 710 34.9
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 4.0e-87 327.0 789 33.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.4e-86 323.9 818 31.8
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.7e-85 321.6 894 32.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.1e-84 317.0 701 32.1
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.6e-83 315.1 692 34.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.6e-82 309.7 783 30.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.6e-80 303.9 794 32.1
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 3.6e-80 303.9 794 31.9
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 6.1e-80 303.1 794 31.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.1e-80 303.1 678 34.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.1e-80 303.1 720 31.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 8.0e-80 302.8 683 34.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 5.2e-79 300.1 839 30.4
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.2e-79 300.1 704 33.1
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.4e-78 297.4 661 34.2
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.7e-77 295.0 815 31.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 3.7e-77 293.9 742 35.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.2e-76 290.8 890 28.5
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 7.0e-76 289.7 755 31.7
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.5e-75 287.3 905 28.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.9e-74 283.9 671 35.0
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.9e-69 267.7 633 34.9
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.1e-68 265.8 775 30.6
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-66 258.8 962 27.4
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.5e-62 243.0 772 30.3
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 8.3e-61 239.6 736 29.6
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-59 235.3 727 29.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.7e-59 234.6 883 27.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.0e-59 233.4 760 27.4
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 7.6e-54 216.5 281 46.6
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-47 195.7 693 27.8
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 9.9e-46 189.5 389 35.0
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-44 185.7 312 37.2
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.3e-42 179.1 465 31.6
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 5.6e-41 173.7 168 50.0
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.3e-41 173.3 694 25.9
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 6.9e-39 166.8 289 34.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 5.4e-36 157.1 269 37.2
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.6e-35 154.1 174 47.7
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.8e-34 152.1 213 41.8
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.3e-34 151.8 214 40.7
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 4.5e-30 137.5 241 36.9
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.8e-24 118.2 249 36.9
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.1e-23 114.8 138 42.0
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.4e-20 105.9 196 34.7
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.3e-18 99.4 286 34.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.9e-18 97.8 180 35.0
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 9.6e-17 93.2 812 21.9
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 3.7e-16 91.3 274 28.8
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.4e-15 89.4 182 33.5
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-14 85.9 496 26.0
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.2e-13 82.0 120 39.2
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 5.5e-12 77.4 83 50.6
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-08 66.2 74 47.3
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 3.4e-06 58.2 65 40.0


User provided reference genes

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