Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 0.0e+00 1136.3 555 100.0
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.6e-199 698.4 551 63.3
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.4e-184 650.2 546 60.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 4.3e-181 638.6 549 58.8
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 7.6e-170 601.3 550 56.5
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 4.8e-164 582.0 547 55.4
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.5e-160 569.7 552 55.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 3.9e-158 562.4 549 54.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.4e-155 553.1 564 53.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.4e-155 553.1 564 53.2
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 5.3e-155 552.0 572 53.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.2e-154 550.8 543 52.1
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.0e-154 550.1 554 52.9
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.9e-154 548.5 540 52.6
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.5e-153 544.7 529 54.6
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.4e-152 543.9 549 52.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.2e-152 541.6 540 51.9
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 7.2e-152 541.6 540 51.9
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.6e-151 540.4 545 53.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.6e-151 540.4 546 53.8
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.9e-150 535.8 541 51.9
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.9e-150 535.8 570 50.9
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 8.8e-150 534.6 540 51.1
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.5e-149 533.1 549 52.1
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 5.7e-149 531.9 541 51.9
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.7e-148 530.4 547 52.5
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 6.3e-148 528.5 543 51.7
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.4e-147 527.3 539 50.6
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.8e-147 526.9 544 51.5
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 3.1e-147 526.2 539 50.8
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.2e-146 524.2 557 51.5
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.3e-145 520.8 569 50.8
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 5.0e-145 518.8 550 49.1
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.9e-144 516.9 545 50.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.2e-143 514.2 536 51.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.2e-143 514.2 543 50.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 7.9e-143 511.5 547 48.3
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.4e-142 510.8 545 50.6
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.4e-142 510.8 550 48.7
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.8e-142 510.4 547 51.2
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 5.1e-142 508.8 546 50.2
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.8e-140 503.1 541 48.1
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 4.5e-138 495.7 552 48.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 5.9e-138 495.4 561 49.0
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 3.8e-137 492.7 572 50.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 6.5e-137 491.9 545 49.5
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.1e-136 491.1 546 49.3
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-136 490.7 546 49.5
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-136 490.7 545 49.4
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 9.4e-136 488.0 547 49.2
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.7e-135 486.5 548 48.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.6e-135 486.1 548 48.9
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.3e-134 483.4 538 48.9
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.0e-133 480.3 550 47.6
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.6e-133 479.9 547 49.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 5.7e-133 478.8 545 48.3
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 7.4e-133 478.4 542 47.6
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.7e-132 477.2 543 48.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.7e-132 477.2 532 49.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.7e-132 476.1 544 46.7
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 6.3e-132 475.3 548 46.9
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.2e-132 474.9 498 51.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.1e-131 474.6 560 47.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.4e-131 474.2 541 48.4
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.4e-131 473.4 545 48.1
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 4.1e-131 472.6 548 46.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 7.0e-131 471.9 545 47.7
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.6e-130 470.7 543 48.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 2.0e-130 470.3 542 47.4
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.7e-129 467.2 544 46.7
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 8.5e-129 464.9 546 47.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.1e-128 464.5 545 44.4
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 4.2e-128 462.6 545 44.4
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.0e-126 458.0 541 45.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-125 453.8 540 46.9
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 2.2e-124 450.3 553 43.9
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.8e-124 449.9 552 46.6
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.1e-123 448.0 563 43.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 3.1e-123 446.4 548 43.1
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.6e-122 444.1 548 43.8
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.6e-122 444.1 543 43.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.0e-122 443.7 544 44.3
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 4.5e-122 442.6 553 43.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.0e-121 441.4 543 44.2
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.0e-121 441.4 549 43.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.0e-121 441.4 542 42.6
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.3e-121 441.0 571 45.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.9e-121 439.9 546 43.4
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.1e-120 438.0 552 42.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-120 438.0 543 44.0
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.9e-120 437.2 545 43.3
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.2e-120 436.0 544 42.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 7.2e-120 435.3 544 44.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 6.8e-118 428.7 574 42.5
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.2e-117 427.9 546 43.8
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 8.3e-116 421.8 529 43.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 5.4e-115 419.1 532 43.0
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 4.7e-111 406.0 551 42.5
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-109 401.0 537 42.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 5.7e-109 399.1 507 44.8
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.1e-107 393.3 493 47.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.6e-106 391.0 550 41.8
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-104 384.0 540 42.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 4.0e-102 376.3 562 39.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 5.2e-102 375.9 551 39.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.9e-99 367.5 598 39.5
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.5e-98 363.2 552 38.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.6e-98 362.8 552 39.9
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 6.6e-97 359.0 537 39.7
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 8.6e-97 358.6 549 39.7
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 8.6e-97 358.6 528 39.6
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.2e-95 354.8 416 45.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 5.2e-94 349.4 538 38.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-93 347.4 537 38.9
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-92 344.7 561 38.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-92 344.7 556 39.0
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 8.3e-92 342.0 562 35.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.9e-84 317.0 588 34.7
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 7.1e-83 312.4 494 39.3
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-80 305.1 541 36.8
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.9e-78 295.4 541 36.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.5e-74 283.5 544 36.4
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-73 282.0 501 35.1
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-73 282.0 501 35.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.3e-70 269.6 525 32.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.4e-60 236.1 404 37.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.0e-54 215.7 495 32.7
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.0e-54 215.7 495 32.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.5e-53 214.9 548 28.6
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.4e-52 209.5 401 35.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.8e-44 183.7 276 41.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-40 171.8 328 34.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.8e-39 167.5 155 52.9
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.2e-36 157.9 544 26.8
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-34 152.1 161 49.7
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 6.1e-34 149.8 488 26.4
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.2e-31 141.4 523 24.5
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.0e-28 130.2 514 24.5
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.5e-28 129.4 466 25.8
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 3.7e-23 114.0 477 23.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.9e-19 101.7 73 65.8
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.1e-18 96.7 520 23.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.7e-15 87.4 177 36.2
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-14 85.9 394 20.6
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 3.1e-14 84.3 207 29.0
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.1e-14 84.0 299 27.8
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.0e-13 81.6 67 56.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 3.8e-12 77.4 57 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.2e-10 72.4 134 27.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.2e-10 72.4 394 23.6
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 6.1e-10 70.1 110 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 3.0e-09 67.8 67 40.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 3.0e-09 67.8 57 50.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.8e-09 66.6 87 46.0
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.6e-08 64.7 93 34.4


User provided reference genes

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