Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 9.9e-166 586.6 283 100.0
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.5e-145 518.8 254 98.4
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.4e-118 428.7 263 75.3
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.0e-117 427.2 263 77.6
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.5e-116 422.5 255 76.5
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.5e-116 422.5 253 77.9
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 4.7e-115 418.3 265 72.8
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 9.7e-113 410.6 258 74.4
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 9.7e-113 410.6 257 75.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.2e-112 409.5 253 76.3
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 3.7e-112 408.7 265 72.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 4.8e-112 408.3 247 78.5
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 4.8e-112 408.3 253 75.9
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 4.8e-112 408.3 265 71.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.2e-112 407.5 246 78.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 2.4e-111 406.0 257 73.2
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 3.1e-111 405.6 254 72.8
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 4.1e-111 405.2 263 71.1
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 9.1e-111 404.1 257 73.5
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 9.1e-111 404.1 253 72.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-110 403.3 259 71.8
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.0e-110 402.9 255 72.9
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.6e-110 402.5 257 73.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 3.5e-110 402.1 257 73.2
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 4.5e-110 401.7 263 70.7
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 5.9e-110 401.4 264 70.5
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 7.7e-110 401.0 263 71.5
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.0e-109 400.6 252 73.8
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.0e-109 400.6 252 73.8
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.0e-109 400.6 263 71.1
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.8e-109 398.7 257 72.4
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.1e-108 397.1 255 72.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.5e-108 396.0 263 71.1
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.5e-108 396.0 263 71.1
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.2e-108 395.6 249 76.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.2e-108 395.2 255 71.8
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.2e-108 395.2 280 66.8
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.2e-108 394.4 252 72.6
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-107 393.7 255 72.2
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.6e-107 393.3 260 73.1
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.6e-107 393.3 252 72.6
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.6e-107 392.1 255 72.9
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.1e-107 391.3 251 72.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 6.1e-107 391.3 265 69.8
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 6.1e-107 391.3 253 71.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 8.0e-107 391.0 263 66.5
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 8.0e-107 391.0 249 72.3
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.0e-107 391.0 251 72.1
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.0e-107 391.0 251 72.1
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 8.0e-107 391.0 256 69.9
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.0e-106 390.6 248 72.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.3e-106 389.4 252 71.8
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-106 389.4 254 71.7
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.0e-106 389.0 249 75.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 4.0e-106 388.7 254 72.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 6.7e-106 387.9 254 72.4
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 6.7e-106 387.9 255 71.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.8e-106 387.5 263 68.4
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 8.8e-106 387.5 252 71.0
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 8.8e-106 387.5 252 71.0
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 8.8e-106 387.5 263 68.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-105 387.1 255 70.2
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 2.0e-105 386.3 255 71.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.0e-105 386.3 252 72.6
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.0e-105 386.3 253 73.1
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.0e-105 386.3 251 71.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 2.6e-105 386.0 257 71.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 2.6e-105 386.0 253 71.1
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 7.5e-105 384.4 253 71.1
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.3e-104 383.6 255 69.4
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.7e-104 383.3 255 70.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.7e-104 383.3 249 72.3
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.8e-104 381.7 255 69.8
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 4.8e-104 381.7 251 71.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 6.3e-104 381.3 248 72.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 8.2e-104 380.9 256 69.9
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-103 380.2 252 70.2
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.8e-103 379.8 246 73.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 7.0e-103 377.9 263 68.1
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.0e-103 377.9 253 69.2
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 9.1e-103 377.5 254 70.9
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.2e-102 377.1 246 70.3
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.0e-102 376.3 248 70.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 2.0e-102 376.3 253 70.0
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.0e-102 376.3 255 71.4
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.7e-102 375.9 250 70.0
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 3.5e-102 375.6 251 71.3
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.3e-101 373.6 243 71.2
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 8.5e-101 370.9 257 68.5
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 7.2e-100 367.9 248 69.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.2e-98 361.7 250 68.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.1e-95 354.0 250 68.0
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.8e-95 353.2 250 66.8
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 9.1e-95 350.9 251 63.7
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 7.7e-94 347.8 257 65.4
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.5e-93 344.7 256 63.7
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 6.5e-93 344.7 260 64.2
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.9e-92 343.2 241 67.2
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.3e-92 342.4 241 67.2
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 4.2e-92 342.0 268 61.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 7.2e-92 341.3 267 59.9
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.1e-91 339.7 257 64.2
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 8.0e-91 337.8 253 66.0
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.0e-90 337.4 238 67.6
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.0e-90 337.4 249 67.1
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.8e-90 336.7 280 60.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.0e-90 335.5 288 57.3
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 8.9e-90 334.3 239 67.4
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 8.9e-90 334.3 239 67.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.6e-89 332.8 247 62.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 3.7e-88 328.9 280 58.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.1e-87 327.4 260 61.5
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.4e-87 326.2 211 72.5
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 5.4e-87 325.1 242 65.7
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.3e-84 314.7 260 63.1
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.3e-84 314.7 191 77.0
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 4.7e-83 312.0 251 59.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 4.0e-82 308.9 222 65.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.2e-81 307.4 255 59.2
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.9e-80 302.8 287 52.3
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.8e-79 300.1 205 67.3
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 4.1e-79 298.9 255 57.3
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-78 296.6 207 67.6
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.5e-76 289.7 296 51.4
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.2e-75 287.3 253 56.5
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 6.0e-70 268.5 266 50.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 8.1e-67 258.1 219 57.5
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.0e-65 253.4 168 71.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 4.4e-65 252.3 300 45.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.7e-62 243.0 189 59.8
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 8.6e-61 238.0 191 58.1
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 7.6e-57 224.9 184 58.2
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.7e-54 216.5 155 65.2
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 8.1e-51 204.9 286 39.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.4e-49 199.1 143 62.2
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.2e-47 193.0 129 69.8
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 9.6e-44 181.4 121 68.6
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-43 180.6 160 56.2
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.4e-41 172.9 187 47.1
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.2e-38 164.5 138 55.8
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.2e-38 164.5 138 55.8
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.6e-30 137.5 82 78.0
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 2.7e-30 136.7 249 34.9
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.0e-29 133.3 91 65.9
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.8e-26 124.0 152 44.1
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 9.7e-20 101.7 273 29.3
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 9.4e-15 85.1 76 50.0
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.0e-09 67.4 51 66.7
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-09 66.6 47 63.8
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 7.2e-07 58.9 47 59.6


User provided reference genes

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