Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 3.2e-55 218.8 167 100.0
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 8.7e-45 184.1 103 90.3
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 1.1e-44 183.7 103 90.3
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 1.5e-44 183.3 103 90.3
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.5e-44 183.3 103 91.3
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 1.5e-44 183.3 103 89.3
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 2.5e-44 182.6 103 90.3
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 2.5e-44 182.6 103 89.3
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 2.5e-44 182.6 103 91.3
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 4.3e-44 181.8 103 89.3
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 5.7e-44 181.4 103 89.3
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 5.7e-44 181.4 103 87.4
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 7.4e-44 181.0 103 89.3
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 7.4e-44 181.0 103 88.3
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 7.4e-44 181.0 103 88.3
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 7.4e-44 181.0 103 89.3
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 9.7e-44 180.6 103 88.3
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 1.3e-43 180.3 103 88.3
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 1.6e-43 179.9 103 89.3
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.6e-43 179.9 103 88.3
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 1.6e-43 179.9 103 87.4
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 1.6e-43 179.9 103 89.3
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.2e-43 179.5 103 87.4
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.2e-43 179.5 103 85.4
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.8e-43 179.1 103 88.3
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 2.8e-43 179.1 103 88.3
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 2.8e-43 179.1 103 87.4
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 3.7e-43 178.7 103 88.3
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 3.7e-43 178.7 103 89.3
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 3.7e-43 178.7 103 87.4
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 4.8e-43 178.3 103 88.3
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 4.8e-43 178.3 103 86.4
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 8.2e-43 177.6 103 86.4
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 8.2e-43 177.6 103 87.4
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 8.2e-43 177.6 103 87.4
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 1.1e-42 177.2 103 87.4
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 1.1e-42 177.2 103 87.4
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.1e-42 177.2 103 87.4
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 1.1e-42 177.2 103 85.4
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 1.8e-42 176.4 103 84.5
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 2.4e-42 176.0 103 85.4
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 2.4e-42 176.0 103 86.4
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 2.4e-42 176.0 103 83.5
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 2.4e-42 176.0 103 86.4
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 2.4e-42 176.0 102 87.3
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 2.4e-42 176.0 103 85.4
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 6.9e-42 174.5 103 85.4
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 6.9e-42 174.5 103 85.4
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 6.9e-42 174.5 103 82.5
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 6.9e-42 174.5 103 83.5
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 6.9e-42 174.5 103 85.4
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 9.0e-42 174.1 103 85.4
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 9.0e-42 174.1 103 83.5
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 9.0e-42 174.1 103 85.4
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 1.2e-41 173.7 103 85.4
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 2.0e-41 172.9 103 84.5
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 2.0e-41 172.9 103 84.5
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 2.0e-41 172.9 103 83.5
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 2.6e-41 172.6 103 84.5
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 2.6e-41 172.6 103 84.5
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 2.6e-41 172.6 103 83.5
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 2.6e-41 172.6 103 85.4
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 3.4e-41 172.2 103 85.4
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 5.9e-41 171.4 103 83.5
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 5.9e-41 171.4 103 83.5
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 5.9e-41 171.4 103 82.5
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 7.6e-41 171.0 103 83.5
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 7.6e-41 171.0 103 81.6
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 7.6e-41 171.0 103 81.6
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 7.6e-41 171.0 103 81.6
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 7.6e-41 171.0 103 82.5
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 1.0e-40 170.6 103 83.5
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 1.3e-40 170.2 103 81.6
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.3e-40 170.2 103 83.5
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.3e-40 170.2 103 82.5
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.3e-40 170.2 103 82.5
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.7e-40 169.9 103 85.4
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 1.7e-40 169.9 103 83.5
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 2.2e-40 169.5 103 81.6
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 2.9e-40 169.1 103 83.5
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 2.9e-40 169.1 103 82.5
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 2.9e-40 169.1 98 87.8
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 3.8e-40 168.7 103 81.6
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 3.8e-40 168.7 103 82.5
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 5.0e-40 168.3 103 83.5
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 80.6
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 81.6
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 81.6
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 6.5e-40 167.9 103 81.6
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 8.5e-40 167.5 103 80.6
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 1.4e-39 166.8 103 80.6
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 1.4e-39 166.8 99 81.8
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 1.9e-39 166.4 103 79.6
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 1.9e-39 166.4 103 80.6
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 1.9e-39 166.4 103 79.6
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.5e-39 166.0 100 82.0
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 4.2e-39 165.2 103 79.6
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.2e-38 163.7 103 78.6
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.6e-38 163.3 103 78.6
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.6e-38 163.3 103 78.6
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 2.3e-37 159.5 103 76.7
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.7e-35 153.3 92 82.6
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 3.7e-35 152.1 103 73.8
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 2.2e-32 142.9 85 82.4
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 2.2e-32 142.9 91 79.1
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 6.7e-29 131.3 103 63.1
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 1.1e-28 130.6 103 61.2
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 1.7e-27 126.7 103 61.2
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 6.3e-27 124.8 103 60.2
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 3.4e-25 119.0 102 60.8
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 8.5e-24 114.4 70 80.0
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.6e-22 110.2 67 82.1
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 1.8e-21 106.7 103 50.5
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.3e-19 100.5 102 50.0
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.6e-14 83.6 62 74.2
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 2.1e-14 83.2 56 73.2
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 2.7e-14 82.8 90 53.3
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.6e-06 55.8 99 28.3
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 3.6e-06 55.8 99 28.3
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 6.1e-06 55.1 98 27.6
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 6.1e-06 55.1 98 27.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 6.1e-06 55.1 98 27.6
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 6.1e-06 55.1 98 27.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 6.1e-06 55.1 98 27.6
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 8.0e-06 54.7 101 28.7
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 8.0e-06 54.7 98 28.6


User provided reference genes

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