Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 7.9e-106 387.1 195 100.0
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 1.6e-61 240.0 197 65.0
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 5.9e-61 238.0 189 64.6
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.3e-60 236.9 194 64.9
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.7e-60 236.5 197 61.9
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 8.6e-60 234.2 199 63.8
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.5e-59 233.4 199 63.8
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 2.5e-59 232.6 140 76.4
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 9.5e-59 230.7 191 62.3
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.2e-58 230.3 197 60.4
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.1e-58 229.6 197 60.9
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.8e-58 229.2 196 63.3
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.8e-58 229.2 140 76.4
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 3.6e-58 228.8 141 75.2
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 6.2e-58 228.0 197 60.4
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 6.2e-58 228.0 189 63.0
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 8.0e-58 227.6 189 59.3
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 1.1e-57 227.3 136 76.5
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.1e-57 227.3 140 75.7
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 1.4e-57 226.9 192 62.0
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.8e-57 226.5 192 60.4
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.3e-57 226.1 189 58.7
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 4.0e-57 225.3 192 60.9
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 4.0e-57 225.3 139 76.3
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 5.2e-57 224.9 198 57.6
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 8.9e-57 224.2 195 60.5
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 8.9e-57 224.2 192 61.5
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 7.5e-56 221.1 146 70.5
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.9e-55 219.2 200 57.0
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 6.4e-55 218.0 174 60.3
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 6.4e-55 218.0 136 74.3
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 6.4e-55 218.0 136 74.3
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 6.4e-55 218.0 146 69.9
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.4e-54 216.9 193 60.1
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.9e-54 216.5 189 59.8
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.9e-54 216.5 195 59.5
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 1.9e-54 216.5 192 58.9
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 2.4e-54 216.1 156 67.3
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 2.4e-54 216.1 193 56.5
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 2.4e-54 216.1 198 58.1
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 5.4e-54 214.9 218 54.6
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 5.4e-54 214.9 199 57.3
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 1.2e-53 213.8 141 69.5
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.2e-53 213.8 190 58.9
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 1.6e-53 213.4 175 62.9
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 2.0e-53 213.0 144 66.7
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 2.0e-53 213.0 156 63.5
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 1.0e-52 210.7 146 67.8
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 1.0e-52 210.7 141 72.3
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 1.0e-52 210.7 189 55.6
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 1.3e-52 210.3 191 55.5
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.7e-52 209.9 176 60.2
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.7e-52 209.9 200 55.5
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 1.7e-52 209.9 140 67.9
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.7e-52 209.9 194 55.7
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.7e-52 209.9 141 71.6
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 2.3e-52 209.5 138 71.0
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.3e-52 209.5 136 72.1
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 3.0e-52 209.1 192 59.9
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 5.0e-52 208.4 144 68.1
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 6.6e-52 208.0 176 58.0
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 8.6e-52 207.6 140 66.4
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 1.1e-51 207.2 144 67.4
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.5e-51 206.8 194 55.2
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.5e-51 206.8 194 53.6
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 2.5e-51 206.1 194 57.2
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 5.6e-51 204.9 141 68.8
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 5.6e-51 204.9 199 55.8
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 5.6e-51 204.9 198 55.1
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 9.5e-51 204.1 139 66.9
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.2e-50 203.8 140 67.9
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.2e-50 203.8 180 59.4
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 1.6e-50 203.4 125 72.8
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 2.8e-50 202.6 191 57.1
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.8e-50 202.6 197 55.3
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 3.6e-50 202.2 125 72.0
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 3.6e-50 202.2 125 73.6
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 4.7e-50 201.8 191 57.1
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 4.7e-50 201.8 140 70.7
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 4.7e-50 201.8 149 63.1
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 6.2e-50 201.4 141 68.1
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 6.2e-50 201.4 141 68.1
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 6.2e-50 201.4 152 61.2
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 8.1e-50 201.1 137 67.9
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.4e-49 200.3 141 67.4
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 1.4e-49 200.3 141 67.4
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 1.4e-49 200.3 125 71.2
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.4e-49 200.3 181 57.5
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 1.4e-49 200.3 169 58.6
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 1.8e-49 199.9 189 56.1
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 3.1e-49 199.1 132 69.7
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 4.0e-49 198.7 125 70.4
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 1.2e-48 197.2 141 63.1
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 2.6e-48 196.1 125 71.2
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 9.9e-48 194.1 136 66.9
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.4e-46 190.3 147 59.9
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.4e-46 190.3 111 79.3
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 1.4e-46 190.3 119 71.4
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 1.6e-45 186.8 203 48.8
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 1.6e-45 186.8 162 60.5
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 1.6e-45 186.8 116 72.4
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 6.0e-45 184.9 116 74.1
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 3.9e-44 182.2 229 50.2
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 5.6e-43 178.3 179 52.5
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 2.1e-42 176.4 126 65.1
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.8e-41 173.3 112 69.6
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 4.9e-39 165.2 151 60.9
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 2.7e-37 159.5 115 64.3
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.0e-36 157.5 150 57.3
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 5.1e-36 155.2 91 75.8
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.9e-35 153.3 122 61.5
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 7.3e-35 151.4 125 56.0
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 1.2e-34 150.6 156 46.8
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 2.8e-34 149.4 127 62.2
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 2.8e-34 149.4 157 52.9
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 4.7e-34 148.7 100 68.0
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 4.7e-34 148.7 155 55.5
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 1.4e-33 147.1 109 62.4
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 9.9e-32 141.0 90 67.8
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 2.9e-31 139.4 95 69.5
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 6.0e-29 131.7 73 80.8
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.1e-27 127.5 109 56.0
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 9.6e-27 124.4 85 68.2
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 4.0e-25 119.0 124 43.5
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 5.8e-24 115.2 139 45.3
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 1.4e-22 110.5 97 51.5
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 3.5e-21 105.9 115 55.7
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 8.7e-20 101.3 111 44.1
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 1.6e-18 97.1 105 53.3
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 2.0e-16 90.1 111 42.3
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 8.4e-15 84.7 64 67.2
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.1e-10 70.1 130 37.7
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 1.5e-08 63.9 37 78.4
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 1.7e-07 60.5 49 57.1
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 5.5e-06 55.5 43 58.1


User provided reference genes

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