Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 2.0e-200 702.2 346 100.0
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.7e-130 469.9 345 67.0
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 5.3e-129 464.9 340 67.1
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.4e-124 450.3 345 64.9
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.8e-124 449.9 341 65.4
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 2.3e-124 449.5 341 63.6
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 6.7e-124 448.0 349 63.0
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 4.4e-123 445.3 341 63.3
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 1.3e-122 443.7 341 62.5
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 2.2e-122 443.0 341 63.9
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 4.1e-121 438.7 343 62.4
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 4.1e-121 438.7 358 61.2
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 9.1e-121 437.6 341 61.0
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 7.7e-120 434.5 344 61.3
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 1.0e-119 434.1 347 61.4
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 2.9e-119 432.6 342 61.7
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 6.5e-119 431.4 342 64.0
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 6.5e-119 431.4 345 62.3
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 8.5e-119 431.0 319 64.9
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 1.9e-118 429.9 348 62.1
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 2.5e-118 429.5 343 60.3
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 3.2e-118 429.1 341 60.7
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 5.5e-118 428.3 349 61.0
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 2.1e-117 426.4 343 59.5
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 2.1e-117 426.4 345 62.3
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 2.1e-117 426.4 351 59.0
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 3.6e-117 425.6 345 60.6
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 1.0e-116 424.1 347 60.8
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 1.4e-116 423.7 352 58.5
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.8e-116 423.3 345 60.6
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 2.3e-116 422.9 346 59.2
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 2.3e-116 422.9 342 62.9
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 5.2e-116 421.8 346 60.1
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 8.8e-116 421.0 347 57.6
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.1e-115 420.6 350 59.1
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 2.0e-115 419.9 346 59.0
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 2.6e-115 419.5 345 59.7
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 4.4e-115 418.7 350 59.1
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 5.7e-115 418.3 350 59.1
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 1.7e-114 416.8 346 60.1
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 3.7e-114 415.6 363 57.9
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 3.7e-114 415.6 347 59.1
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 3.7e-114 415.6 348 57.2
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 8.2e-114 414.5 343 58.0
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 8.2e-114 414.5 346 58.7
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 1.4e-113 413.7 342 58.8
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.8e-113 413.3 311 66.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 5.3e-113 411.8 326 60.4
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 5.3e-113 411.8 326 60.4
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 2.6e-112 409.5 351 57.3
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 3.8e-111 405.6 341 58.1
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 3.8e-111 405.6 343 59.2
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 1.1e-110 404.1 310 66.1
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 1.9e-110 403.3 326 59.8
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 2.5e-110 402.9 348 57.8
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 3.2e-110 402.5 347 57.9
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 3.6e-109 399.1 347 58.2
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 4.7e-109 398.7 326 57.7
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.8e-108 396.7 347 57.6
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 4.0e-108 395.6 348 54.0
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 5.2e-108 395.2 349 55.6
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 6.7e-108 394.8 328 58.5
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 1.5e-107 393.7 326 57.1
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 1.5e-107 393.7 344 56.7
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 2.6e-107 392.9 353 54.4
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 2.6e-107 392.9 344 57.0
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 5.7e-107 391.7 365 51.8
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 5.7e-107 391.7 345 59.1
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 7.5e-107 391.3 343 56.0
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.3e-106 390.6 363 55.9
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 2.8e-106 389.4 353 53.8
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 2.8e-106 389.4 346 56.1
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 3.7e-106 389.0 343 57.1
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 2.4e-105 386.3 345 54.2
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 3.1e-105 386.0 351 52.7
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 3.1e-105 386.0 351 52.7
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 9.1e-105 384.4 326 59.2
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 9.1e-105 384.4 348 52.3
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 1.2e-104 384.0 349 53.0
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 3.5e-104 382.5 349 53.0
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 3.2e-102 375.9 272 69.5
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 9.4e-102 374.4 324 57.7
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 2.7e-101 372.9 375 49.3
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 2.7e-101 372.9 273 63.7
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 4.0e-100 369.0 379 49.1
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 6.8e-100 368.2 345 55.1
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.7e-96 356.3 338 53.6
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 2.5e-94 349.7 346 53.2
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 7.2e-94 348.2 255 65.5
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 1.4e-92 344.0 252 65.5
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 3.0e-92 342.8 344 51.2
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 1.7e-90 337.0 331 52.6
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 2.0e-88 330.1 330 51.8
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 6.1e-85 318.5 348 51.4
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 6.8e-84 315.1 260 61.2
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 4.9e-82 308.9 304 52.6
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.5e-78 296.6 241 60.2
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 6.2e-77 292.0 351 46.4
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 8.0e-77 291.6 262 55.7
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 4.4e-75 285.8 269 55.4
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 4.0e-68 262.7 237 53.6
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 1.3e-66 257.7 215 61.4
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 2.4e-65 253.4 310 45.8
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 1.6e-64 250.8 193 60.6
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 1.5e-62 244.2 355 39.4
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 2.1e-61 240.4 243 53.9
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 6.8e-60 235.3 183 55.7
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 2.8e-37 160.2 128 54.7
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 1.3e-34 151.4 127 57.5
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 2.5e-33 147.1 317 35.6
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 1.3e-29 134.8 100 61.0
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 4.5e-27 126.3 211 36.5
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 4.9e-26 122.9 146 43.8
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 3.6e-16 90.1 71 52.1
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 1.3e-13 81.6 70 57.1
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 1.8e-12 77.8 84 52.4
CBR_g34612 Chara braunii HOM05D006965 ORTHO05D008652 6.5e-10 69.3 106 37.7


User provided reference genes

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