Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 4.8e-214 747.7 401 100.0
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.8e-173 612.8 381 87.7
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.8e-168 596.3 390 81.3
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.3e-166 590.1 381 84.0
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.3e-166 590.1 380 84.5
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 5.3e-165 584.7 402 79.4
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.5e-164 581.6 380 82.9
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 5.9e-164 581.3 401 80.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.5e-162 576.6 403 79.4
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.6e-161 572.0 388 79.6
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.1e-159 567.0 412 78.6
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.1e-159 567.0 412 78.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.0e-159 566.2 390 80.0
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.3e-159 565.5 383 79.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 3.3e-159 565.5 397 78.1
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.1e-157 560.5 399 75.7
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.4e-157 560.1 381 79.8
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.8e-157 559.7 386 78.8
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 5.3e-157 558.1 387 79.1
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 9.1e-157 557.4 352 83.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.1e-157 557.4 388 79.6
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.2e-156 557.0 380 78.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 2.0e-156 556.2 388 79.4
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.7e-156 555.8 377 79.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-156 555.4 388 79.1
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 3.5e-156 555.4 347 83.6
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.5e-156 555.4 384 78.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.0e-155 553.9 405 76.0
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.0e-155 553.9 387 79.3
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.9e-155 552.4 380 78.7
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.8e-155 552.0 383 79.1
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.8e-155 552.0 401 77.8
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 5.0e-155 551.6 402 76.9
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.1e-154 550.4 398 76.6
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-154 550.1 388 78.6
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.5e-154 550.1 380 79.7
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.9e-154 549.7 403 74.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.9e-154 549.7 380 79.5
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.9e-154 549.7 380 79.7
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 4.2e-154 548.5 335 85.7
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 7.2e-154 547.7 377 79.0
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 9.4e-154 547.4 395 75.9
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.1e-153 546.2 386 77.5
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.1e-153 546.2 399 74.4
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 3.6e-153 545.4 387 77.3
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.6e-153 545.4 398 75.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.6e-153 545.4 335 84.5
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.0e-152 543.9 353 80.7
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.0e-152 542.3 376 78.2
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.0e-152 542.3 334 84.1
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.0e-152 542.3 381 78.0
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.0e-152 542.3 381 77.2
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 4.0e-152 542.0 394 75.4
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 4.0e-152 542.0 353 80.5
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 6.8e-152 541.2 381 77.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 6.8e-152 541.2 381 75.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 8.8e-152 540.8 382 76.7
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.2e-151 540.4 393 76.1
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.2e-151 540.4 398 74.4
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.5e-151 540.0 340 83.2
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.0e-151 539.7 336 83.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.6e-151 539.3 367 80.1
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 3.4e-151 538.9 403 75.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 3.4e-151 538.9 376 77.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 3.4e-151 538.9 382 78.0
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 5.7e-151 538.1 396 76.0
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.3e-150 537.0 402 73.9
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.3e-150 537.0 394 75.1
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.3e-150 537.0 387 76.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.7e-150 536.6 399 74.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.2e-150 536.2 393 74.3
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.2e-150 536.2 384 75.5
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.2e-150 536.2 410 72.9
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.8e-150 535.8 389 75.1
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.7e-150 535.4 401 74.8
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.4e-149 533.5 388 76.3
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.4e-149 533.5 401 73.1
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.8e-149 533.1 396 74.2
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 3.1e-149 532.3 397 74.1
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.1e-149 532.3 390 74.6
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 5.4e-149 531.6 376 76.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 7.0e-149 531.2 402 73.4
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 7.0e-149 531.2 401 74.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 7.0e-149 531.2 334 83.5
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 9.1e-149 530.8 392 74.0
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.2e-148 530.4 327 85.0
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.2e-148 530.4 346 80.9
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-148 530.0 399 73.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.6e-148 530.0 399 73.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.0e-148 529.6 408 73.0
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-148 529.6 396 73.7
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 2.0e-148 529.6 333 84.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.5e-148 528.9 376 75.5
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.5e-148 528.9 376 75.5
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 4.5e-148 528.5 397 73.8
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 7.7e-148 527.7 388 75.3
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.9e-147 525.8 399 72.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.5e-147 524.6 376 74.7
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.5e-147 524.6 376 74.7
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.5e-146 523.5 387 73.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 3.2e-146 522.3 385 74.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 7.2e-146 521.2 400 74.5
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 7.2e-146 521.2 385 74.8
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-145 520.4 382 73.6
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-145 518.5 428 68.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.3e-144 516.2 329 81.2
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.0e-144 515.8 379 75.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 7.5e-143 511.1 330 81.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.3e-142 510.4 297 88.6
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 3.1e-141 505.8 360 76.1
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.0e-140 503.1 425 68.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.3e-139 499.6 317 81.7
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.5e-138 496.9 297 86.9
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.6e-137 493.4 404 69.8
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.8e-137 492.7 297 85.2
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 8.9e-136 487.6 381 71.7
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 2.2e-134 483.0 381 70.6
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.5e-132 475.7 342 73.4
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.0e-128 464.2 305 78.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 2.9e-126 456.1 344 73.3
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.2e-125 452.6 346 73.4
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.2e-125 452.6 376 66.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.0e-123 447.6 425 60.9
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.6e-121 439.1 401 66.1
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.8e-120 436.8 377 67.1
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-114 417.2 272 82.0
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.5e-114 416.4 246 89.0
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.7e-110 403.7 319 67.4
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 3.9e-107 392.5 345 60.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.1e-105 386.7 279 70.3
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 6.9e-104 381.7 341 65.1
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 6.4e-94 348.6 333 58.6
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.8e-89 333.2 198 87.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.1e-76 290.4 198 77.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.1e-76 290.4 198 77.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.4e-72 276.9 166 84.3
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 7.6e-71 271.9 378 49.2
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 6.5e-62 242.3 294 45.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 6.3e-57 225.7 310 42.6
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 9.1e-56 221.9 129 86.0
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.2e-53 213.4 328 41.2
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.0e-51 208.4 154 75.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.7e-46 191.0 199 59.8
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-45 188.0 178 61.2
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.2e-37 159.1 149 60.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.1e-36 156.0 213 46.5
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 2.6e-34 150.6 134 67.2
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 4.2e-29 133.3 100 69.0
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 9.5e-29 132.1 80 85.0
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 8.3e-17 92.4 75 68.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 3.3e-13 80.5 47 87.2
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 4.7e-12 76.6 62 67.7
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.5e-10 71.6 90 47.8
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.7e-09 68.2 42 71.4
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.4e-08 65.1 53 66.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 4.1e-08 63.5 43 76.7


User provided reference genes

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