Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1724.5 864 100.0
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 5.1e-290 1001.1 774 65.0
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.0e-285 986.9 774 63.7
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 1.3e-277 959.9 774 62.4
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 1.6e-259 899.8 774 57.8
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 4.7e-259 898.3 799 57.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 6.3e-256 887.9 774 59.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.6e-254 883.2 750 60.7
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 3.5e-254 882.1 774 57.1
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 9.5e-252 874.0 773 56.9
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 6.1e-251 871.3 773 56.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 6.1e-251 871.3 774 57.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 6.1e-251 871.3 774 56.8
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 1.8e-250 869.8 774 57.4
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 2.3e-250 869.4 751 59.0
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 3.0e-250 869.0 764 57.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 5.2e-250 868.2 753 58.4
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 4.4e-249 865.1 773 58.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 3.7e-248 862.1 773 56.5
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 3.7e-248 862.1 773 56.9
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 3.2e-247 859.0 777 56.8
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 3.5e-246 855.5 773 56.9
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 1.9e-244 849.7 773 57.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 1.9e-244 849.7 776 55.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 4.3e-244 848.6 774 56.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 7.3e-244 847.8 780 56.8
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.8e-242 843.2 774 56.6
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 7.5e-241 837.8 774 55.3
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 1.7e-240 836.6 773 55.1
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 3.7e-240 835.5 762 56.7
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.1e-239 832.0 762 56.7
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 5.4e-239 831.6 810 54.1
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 6.6e-237 824.7 779 54.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 1.9e-236 823.2 775 54.8
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 1.6e-235 820.1 773 54.2
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 1.6e-235 820.1 768 54.6
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 6.2e-235 818.1 771 54.1
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 1.2e-233 813.9 776 53.9
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 4.9e-232 808.5 778 53.6
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 4.9e-232 808.5 779 53.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 1.2e-230 803.9 788 52.8
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 2.1e-230 803.1 775 53.2
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 5.1e-229 798.5 775 52.9
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 2.5e-228 796.2 775 52.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 1.6e-227 793.5 822 51.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 3.6e-227 792.3 763 54.1
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 6.2e-227 791.6 780 52.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 8.1e-227 791.2 785 52.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.1e-226 790.8 774 53.4
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 1.8e-226 790.0 779 51.7
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 8.9e-226 787.7 787 52.4
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 2.0e-225 786.6 788 52.0
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 3.4e-225 785.8 776 51.4
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 5.8e-225 785.0 772 53.4
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 1.7e-224 783.5 776 51.0
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 2.2e-224 783.1 776 51.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 2.9e-224 782.7 779 51.2
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 8.4e-224 781.2 775 51.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.1e-223 780.8 774 52.5
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 2.1e-222 776.5 752 52.8
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 1.0e-221 774.2 772 52.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 6.6e-221 771.5 776 51.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 9.6e-220 767.7 776 51.4
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 1.6e-219 766.9 779 50.8
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 2.1e-219 766.5 775 50.7
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 2.1e-219 766.5 781 51.3
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 6.2e-219 765.0 777 51.4
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 5.2e-218 761.9 780 51.2
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 6.9e-218 761.5 775 50.7
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 2.0e-217 760.0 787 51.5
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 2.6e-217 759.6 781 51.9
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 3.8e-216 755.7 775 52.1
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 3.8e-216 755.7 777 50.8
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 8.4e-216 754.6 779 50.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 2.1e-214 750.0 775 50.1
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 3.0e-213 746.1 774 49.0
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 6.6e-213 745.0 776 50.3
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 1.5e-212 743.8 774 49.1
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 5.6e-212 741.9 774 48.8
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 9.6e-212 741.1 774 49.0
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 9.6e-212 741.1 774 49.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 2.4e-207 726.5 785 48.0
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 1.1e-194 684.5 817 46.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.1e-194 684.5 781 46.0
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.4e-194 683.3 777 45.2
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 4.1e-186 656.0 781 44.7
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.2e-184 650.2 804 44.5
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 5.5e-183 645.6 570 58.4
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.1e-180 637.9 545 58.7
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 4.2e-167 592.8 545 56.1
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 5.2e-165 585.9 821 41.9
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-162 577.0 818 41.9
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 7.7e-161 572.0 547 53.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 5.0e-160 569.3 507 56.0
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 4.4e-156 556.2 805 39.0
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 8.0e-150 535.4 507 53.8
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.9e-144 516.9 421 60.1
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 7.2e-143 512.3 458 56.1
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 8.6e-136 488.8 459 52.3
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.6e-126 456.8 361 63.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.0e-124 451.1 376 59.3
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 2.3e-120 437.6 646 39.9
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.1e-111 408.7 531 43.7
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 8.4e-107 392.5 774 34.0
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.4e-98 365.2 819 31.9
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 2.7e-97 360.9 806 32.8
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.1e-95 355.5 423 45.4
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.9e-91 340.1 296 57.8
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 4.5e-84 317.0 799 28.5
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 2.1e-78 298.1 271 56.5
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.7e-78 297.4 310 47.7
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.1e-77 295.8 328 45.4
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.5e-76 292.0 311 47.3
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 5.8e-76 290.0 271 55.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 7.2e-58 229.9 542 31.0
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 3.9e-56 224.2 220 52.7
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.2e-54 216.5 218 52.8
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 3.8e-51 207.6 197 54.3
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.1e-45 189.5 271 43.2
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.2e-36 159.5 217 41.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-26 125.6 278 33.5
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 7.2e-26 123.6 154 41.6
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 2.8e-25 121.7 287 33.4
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.6e-25 121.3 287 33.4
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.8e-21 109.0 159 42.8
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 4.7e-17 94.4 475 24.2
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 5.8e-15 87.4 452 22.1
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 7.5e-15 87.0 159 33.3
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 7.8e-12 77.0 477 24.3
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 3.1e-08 65.1 91 38.5
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.3e-06 59.7 405 23.5


User provided reference genes

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