Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 6.8e-142 507.3 252 100.0
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.8e-110 402.9 244 80.3
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.8e-109 397.9 237 82.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 3.8e-108 395.2 251 79.3
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 3.8e-108 395.2 251 77.7
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 8.4e-108 394.0 237 81.9
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 1.4e-107 393.3 249 78.7
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 1.4e-107 393.3 237 81.4
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 1.9e-107 392.9 237 81.4
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 5.4e-107 391.3 237 81.4
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 9.3e-107 390.6 237 80.6
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 9.3e-107 390.6 237 81.9
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 2.1e-106 389.4 237 81.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 2.7e-106 389.0 237 81.0
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 3.5e-106 388.7 251 76.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 4.6e-106 388.3 237 81.4
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 4.6e-106 388.3 237 79.7
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 4.6e-106 388.3 244 79.5
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 6.0e-106 387.9 237 80.2
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 6.0e-106 387.9 237 80.2
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 7.8e-106 387.5 237 81.0
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.0e-105 387.1 237 80.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 1.0e-105 387.1 237 81.0
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 1.0e-105 387.1 237 81.0
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 3.0e-105 385.6 249 79.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 3.0e-105 385.6 237 81.9
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 3.9e-105 385.2 237 80.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 3.9e-105 385.2 237 79.7
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 6.6e-105 384.4 237 80.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 8.7e-105 384.0 237 80.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 8.7e-105 384.0 237 79.3
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.5e-104 383.3 237 80.2
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.5e-104 383.3 237 80.2
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 1.5e-104 383.3 237 80.2
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 1.5e-104 383.3 237 80.2
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 1.5e-104 383.3 237 78.5
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.5e-104 382.5 237 79.7
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 2.5e-104 382.5 237 79.7
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.5e-104 382.5 265 73.2
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 2.5e-104 382.5 237 80.2
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.3e-104 382.1 237 78.5
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 3.3e-104 382.1 237 78.9
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 4.3e-104 381.7 237 80.6
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 4.3e-104 381.7 237 80.6
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 5.6e-104 381.3 237 79.3
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 5.6e-104 381.3 237 79.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 7.3e-104 380.9 237 80.2
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 9.6e-104 380.6 237 81.0
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.6e-103 379.8 237 78.5
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 3.6e-103 378.6 229 80.8
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 4.8e-103 378.3 236 78.4
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 8.1e-103 377.5 237 78.9
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.1e-102 377.1 237 79.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.1e-102 377.1 269 71.0
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 1.1e-102 377.1 237 76.8
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 1.1e-102 377.1 237 77.2
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.4e-102 376.7 249 75.5
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 2.4e-102 375.9 237 77.6
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 2.4e-102 375.9 266 72.6
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.1e-102 375.6 249 76.7
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 3.1e-102 375.6 242 78.1
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 3.1e-102 375.6 237 78.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 3.1e-102 375.6 251 75.7
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 4.0e-102 375.2 250 75.6
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 5.3e-102 374.8 237 78.9
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 6.9e-102 374.4 237 79.3
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 6.9e-102 374.4 242 77.7
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 1.5e-101 373.2 250 74.8
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.5e-101 373.2 238 78.6
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 2.6e-101 372.5 250 74.8
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 2.6e-101 372.5 237 78.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 4.5e-101 371.7 237 78.5
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 7.6e-101 370.9 238 78.2
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 9.9e-101 370.5 238 76.5
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 2.2e-100 369.4 237 77.6
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 2.2e-100 369.4 231 79.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 2.2e-100 369.4 237 77.6
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 2.9e-100 369.0 237 76.8
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 3.8e-100 368.6 237 75.9
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 3.8e-100 368.6 237 78.5
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 4.9e-100 368.2 237 77.6
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 4.9e-100 368.2 237 77.6
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 4.9e-100 368.2 237 77.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 6.4e-100 367.9 237 77.2
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.4e-99 366.7 237 77.2
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 1.4e-99 366.7 238 77.3
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 2.4e-99 365.9 237 77.2
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 3.2e-99 365.5 237 77.2
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 3.2e-99 365.5 237 77.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 4.2e-99 365.2 237 77.2
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 7.1e-99 364.4 237 74.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 9.3e-99 364.0 237 76.8
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.1e-98 362.8 246 73.6
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 3.0e-97 359.0 237 75.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 6.7e-97 357.8 308 62.7
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.8e-95 351.7 237 73.0
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.8e-94 349.7 237 74.3
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 9.3e-91 337.4 239 72.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 1.8e-86 323.2 237 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 3.1e-70 269.2 233 59.7
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 5.0e-68 261.9 229 59.8
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.1e-67 260.8 188 72.9
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 3.9e-65 252.3 232 55.6
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.6e-64 249.6 179 69.3
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 7.2e-59 231.5 229 51.1
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 2.7e-58 229.6 229 50.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 2.4e-46 189.9 227 41.9
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 5.3e-46 188.7 109 82.6
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 4.8e-39 165.6 222 43.7
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-38 164.5 228 41.7
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-38 164.1 228 41.7
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 3.3e-35 152.9 140 58.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 3.3e-35 152.9 140 58.6
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-35 152.1 228 43.4
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.9e-31 139.0 159 49.1
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.3e-25 120.2 215 33.0
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.3e-25 120.2 92 68.5
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 4.4e-24 115.9 76 76.3
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 2.9e-23 113.2 81 66.7
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 3.7e-23 112.8 101 60.4
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.9e-23 112.5 272 33.5
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 6.0e-21 105.5 109 56.9
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 4.3e-19 99.4 243 30.5
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 6.8e-17 92.0 254 33.1
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.6e-16 90.1 89 49.4
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 4.4e-16 89.4 224 31.2
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.3e-15 87.8 71 66.2
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 8.6e-12 75.1 51 62.7
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 5.6e-11 72.4 46 69.6
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.8e-09 67.4 61 57.4
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.2e-08 64.7 47 57.4


User provided reference genes

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