Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 2.6e-103 378.6 179 100.0
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.9e-74 282.7 178 72.5
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.8e-73 278.9 176 72.7
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 5.3e-72 274.6 176 70.5
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 9.0e-72 273.9 176 70.5
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.5e-71 273.1 176 70.5
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.5e-71 273.1 176 69.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 3.4e-71 271.9 174 71.8
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 7.6e-71 270.8 176 71.0
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 7.6e-71 270.8 176 69.9
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 7.6e-71 270.8 176 71.0
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 9.9e-71 270.4 176 71.0
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 9.9e-71 270.4 177 68.9
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.2e-70 269.2 176 69.9
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.9e-70 268.9 176 71.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.9e-70 268.9 176 71.0
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.9e-70 268.9 175 71.4
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.9e-70 268.9 173 69.4
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 3.8e-70 268.5 173 69.9
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.8e-70 268.5 175 70.3
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 6.4e-70 267.7 176 71.0
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.1e-69 266.9 174 69.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 1.4e-69 266.5 176 69.9
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.4e-69 266.5 176 69.3
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.9e-69 266.2 175 68.6
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.9e-69 266.2 176 69.9
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.9e-69 266.2 174 70.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.2e-69 265.4 177 67.8
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 3.2e-69 265.4 175 68.0
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 5.4e-69 264.6 176 69.9
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 7.1e-69 264.2 180 69.4
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 7.1e-69 264.2 176 68.2
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 9.3e-69 263.8 175 70.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.2e-68 263.5 174 69.5
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.2e-68 263.5 176 69.9
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.1e-68 262.7 172 69.2
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 2.7e-68 262.3 171 70.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.5e-68 261.9 177 68.4
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.6e-68 261.5 175 68.6
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 6.0e-68 261.2 176 69.3
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.0e-68 261.2 176 69.3
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.0e-67 260.4 172 69.8
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.0e-67 260.4 172 69.2
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.3e-67 260.0 175 68.0
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.3e-67 260.0 174 67.8
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.3e-67 259.2 176 68.2
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 2.3e-67 259.2 173 69.9
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.0e-67 258.8 174 65.5
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.9e-66 256.1 176 65.9
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 3.3e-66 255.4 173 67.6
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 4.3e-66 255.0 176 67.0
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.4e-66 254.2 175 66.9
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.4e-66 254.2 173 68.8
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 7.4e-66 254.2 176 65.9
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 7.4e-66 254.2 173 63.6
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 7.4e-66 254.2 173 63.6
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.3e-65 253.4 176 66.5
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.3e-65 253.4 176 66.5
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.6e-65 253.1 175 66.3
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 1.6e-65 253.1 176 66.5
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.8e-65 252.3 174 66.7
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.7e-65 251.9 175 65.1
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 8.1e-65 250.8 176 67.6
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.4e-64 250.0 178 64.6
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.8e-64 249.6 176 63.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.8e-64 249.6 175 65.7
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.8e-64 249.6 176 64.8
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.4e-64 249.2 175 66.3
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.4e-64 249.2 178 64.0
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 3.1e-64 248.8 177 65.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.3e-64 248.1 166 68.1
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 6.9e-64 247.7 174 64.9
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.2e-63 246.9 161 70.2
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.2e-63 246.9 174 66.7
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.0e-63 246.1 160 70.6
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.4e-63 245.4 176 64.8
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 3.4e-63 245.4 178 64.6
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 5.8e-63 244.6 161 69.6
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.3e-62 243.4 177 62.7
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.9e-62 242.3 171 64.9
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.8e-62 241.9 174 63.8
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 4.9e-62 241.5 176 61.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 4.9e-62 241.5 178 64.6
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.9e-62 241.5 172 60.5
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 6.5e-62 241.1 175 62.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 6.5e-62 241.1 177 59.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 6.5e-62 241.1 176 62.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.1e-61 240.4 179 63.7
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 3.2e-61 238.8 176 63.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.5e-61 238.0 178 63.5
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 9.3e-61 237.3 177 61.6
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.2e-60 236.9 176 61.4
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 3.9e-59 231.9 160 66.2
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 3.9e-59 231.9 154 68.2
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.9e-58 229.6 175 62.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 4.3e-58 228.4 165 65.5
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-57 226.5 169 61.5
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.7e-57 225.3 153 66.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.3e-56 221.5 143 70.6
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.6e-55 217.6 152 66.4
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.7e-54 216.5 154 67.5
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.9e-54 215.7 150 66.0
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.0e-51 207.2 156 59.6
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 4.5e-47 191.8 175 50.3
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.7e-46 189.9 178 50.0
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 5.0e-46 188.3 166 55.4
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.7e-44 182.6 175 48.6
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.3e-43 179.5 129 64.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 3.3e-42 175.6 126 61.9
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 9.7e-42 174.1 181 46.4
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 5.3e-40 168.3 138 58.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.9e-35 152.1 174 43.7
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.8e-32 143.3 128 57.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 3.8e-22 109.0 169 39.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 6.1e-20 101.7 155 38.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.8e-19 100.1 184 38.0
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 4.0e-19 99.0 68 66.2
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.2e-17 93.2 60 68.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.9e-14 82.8 92 46.7
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 1.0e-06 57.8 200 29.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.3e-06 56.6 158 29.7


User provided reference genes

Program Settings