Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.8e-88 326.6 151 100.0
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 7.1e-70 267.3 150 81.3
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.6e-64 248.8 145 77.2
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 4.6e-61 238.0 148 72.3
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.6e-58 229.6 148 69.6
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 4.8e-58 228.0 148 70.9
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.1e-57 226.9 148 68.9
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.4e-57 225.7 147 67.3
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.3e-57 224.6 148 70.3
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 9.0e-57 223.8 148 70.3
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 9.0e-57 223.8 148 70.3
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.2e-56 223.4 147 68.7
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.5e-56 223.0 150 68.7
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 3.4e-56 221.9 149 69.8
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.4e-56 221.9 148 68.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 4.5e-56 221.5 141 68.8
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 2.9e-55 218.8 146 68.5
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.8e-55 218.4 146 67.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.4e-54 216.5 143 66.4
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.9e-54 216.1 141 70.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.4e-54 215.7 142 67.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.4e-54 215.7 143 69.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.4e-54 215.7 137 70.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.4e-54 215.7 147 66.0
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.4e-54 215.7 148 65.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.2e-54 214.9 143 67.8
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 4.2e-54 214.9 147 66.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 4.2e-54 214.9 147 66.0
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 5.5e-54 214.5 145 66.9
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.5e-54 214.5 145 67.6
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 7.1e-54 214.2 141 67.4
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 7.1e-54 214.2 152 65.8
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 9.3e-54 213.8 146 65.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.2e-53 213.4 146 65.8
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.2e-53 213.4 142 66.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.2e-53 213.4 137 69.3
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.6e-53 213.0 148 63.5
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.1e-53 212.6 141 67.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.7e-53 212.2 144 66.7
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.5e-53 211.8 149 68.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.6e-53 211.5 136 72.8
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 6.0e-53 211.1 146 65.1
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 6.0e-53 211.1 147 65.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 7.9e-53 210.7 141 68.1
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.0e-52 210.3 148 66.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.3e-52 209.9 142 66.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.3e-52 209.9 143 65.0
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.8e-52 209.5 139 69.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.8e-52 209.5 142 65.5
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 3.9e-52 208.4 150 64.0
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 5.1e-52 208.0 150 65.3
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 5.1e-52 208.0 134 68.7
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 5.1e-52 208.0 149 62.4
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.1e-51 206.8 139 66.9
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 3.3e-51 205.3 143 62.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 7.4e-51 204.1 135 64.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 4.8e-50 201.4 149 61.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 8.1e-50 200.7 130 67.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-49 200.3 130 67.7
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.1e-49 200.3 148 62.8
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 132 66.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.8e-49 199.5 142 62.0
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.1e-49 198.7 151 60.9
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.1e-49 198.7 132 66.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.0e-49 198.4 130 68.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.0e-49 198.4 130 68.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.0e-49 198.4 130 68.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 9.0e-49 197.2 132 65.9
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 9.0e-49 197.2 145 64.8
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 9.0e-49 197.2 151 61.6
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 9.0e-49 197.2 142 64.1
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.5e-48 196.4 122 73.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.6e-48 195.7 156 59.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.6e-48 195.7 145 63.4
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.4e-48 195.3 139 63.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 3.4e-48 195.3 139 63.3
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.5e-48 194.9 135 65.2
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.5e-48 194.9 139 63.3
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.8e-48 194.5 125 70.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 5.8e-48 194.5 145 62.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 7.6e-48 194.1 136 64.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 7.6e-48 194.1 136 64.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 7.6e-48 194.1 136 64.0
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.3e-47 193.4 151 60.9
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.7e-47 193.0 149 62.4
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.9e-47 192.2 131 67.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 3.8e-47 191.8 133 63.9
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.1e-46 190.3 145 62.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.4e-46 189.9 148 58.1
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-46 189.5 132 63.6
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.9e-46 189.5 140 61.4
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.9e-46 189.5 130 66.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.5e-46 189.1 130 66.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.2e-46 188.3 130 66.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 7.1e-46 187.6 135 62.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.3e-46 187.2 130 66.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 3.5e-45 185.3 213 45.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 6.0e-45 184.5 132 62.9
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.8e-44 183.0 132 65.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 8.7e-44 180.6 140 60.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.1e-43 180.3 136 58.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.1e-43 180.3 136 58.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.9e-43 179.5 150 53.3
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 4.3e-43 178.3 150 52.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 9.6e-43 177.2 140 57.1
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 9.6e-43 177.2 214 44.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.7e-42 175.3 128 62.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.8e-41 172.9 122 64.8
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.4e-41 172.6 147 57.1
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.6e-40 169.1 145 55.9
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 3.8e-39 165.2 152 52.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.1e-38 163.7 147 54.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 7.2e-38 161.0 148 50.0
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-37 160.2 113 64.6
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 3.6e-37 158.7 124 61.3
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 3.8e-31 138.7 134 48.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 5.0e-31 138.3 133 51.1
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 8.5e-31 137.5 134 47.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.2e-29 133.7 148 48.0
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 2.1e-29 132.9 135 45.9
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 3.6e-29 132.1 118 53.4
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 6.1e-29 131.3 137 49.6
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 7.9e-29 131.0 84 73.8
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.0e-28 130.6 83 71.1
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.0e-28 130.6 119 52.1
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 3.9e-28 128.6 119 51.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.1e-27 127.1 84 69.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.3e-26 123.6 149 40.3
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-25 119.8 110 51.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.4e-25 119.4 83 66.3
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 5.3e-25 118.2 97 54.6
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.2e-23 112.8 96 55.2
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.4e-22 110.2 148 38.5
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.4e-22 110.2 192 36.5
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.2e-20 101.7 137 38.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.0e-19 99.8 134 38.8
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 2.6e-19 99.4 86 53.5
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.8e-15 85.5 145 32.4
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 6.5e-15 84.7 57 64.9
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.2e-14 82.4 107 40.2
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 3.6e-13 79.0 73 52.1
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.0e-12 77.4 60 53.3
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.8e-12 76.6 60 53.3
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 5.9e-08 61.6 39 69.2
Ah.09g226670 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.0e-07 60.8 33 84.8
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 4.2e-06 55.5 48 54.2


User provided reference genes

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