Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 4.3e-164 581.3 296 100.0
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 3.0e-80 302.8 151 100.0
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 1.4e-74 283.9 173 79.2
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 2.4e-74 283.1 173 78.6
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 4.2e-74 282.3 173 78.0
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 4.2e-74 282.3 173 78.0
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 1.6e-73 280.4 173 78.0
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 1.6e-73 280.4 173 77.5
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 3.5e-73 279.3 173 79.2
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 1.3e-72 277.3 173 76.9
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 1.8e-72 276.9 173 76.9
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 1.8e-72 276.9 173 76.9
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 2.3e-72 276.6 173 76.3
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 5.1e-72 275.4 173 76.9
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 5.1e-72 275.4 173 76.3
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 6.7e-72 275.0 172 77.3
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 8.7e-72 274.6 215 66.5
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 1.1e-71 274.2 215 66.5
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 2.5e-71 273.1 173 75.7
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 5.6e-71 271.9 172 74.4
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 5.6e-71 271.9 173 75.7
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 7.4e-71 271.6 173 75.1
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 1.3e-70 270.8 173 75.7
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.6e-70 270.4 172 76.2
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 1.6e-70 270.4 172 76.2
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 2.1e-70 270.0 172 74.4
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 2.8e-70 269.6 172 76.2
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 2.8e-70 269.6 172 74.4
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 4.8e-70 268.9 171 76.6
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 8.1e-70 268.1 171 75.4
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 1.1e-69 267.7 172 75.0
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 1.1e-69 267.7 173 74.6
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 1.8e-69 266.9 172 73.8
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 1.8e-69 266.9 171 75.4
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 3.1e-69 266.2 173 74.0
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 4.0e-69 265.8 173 75.7
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 9.0e-69 264.6 172 73.8
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 2.0e-68 263.5 173 73.4
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 1.7e-67 260.4 173 72.3
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 2.2e-67 260.0 173 69.9
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 2.9e-67 259.6 173 71.7
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 3.8e-67 259.2 172 70.3
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 3.8e-67 259.2 173 72.3
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 4.9e-67 258.8 172 71.5
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 4.9e-67 258.8 172 73.8
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 6.5e-67 258.5 172 71.5
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 6.5e-67 258.5 243 59.7
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 8.4e-67 258.1 171 73.1
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 8.4e-67 258.1 182 69.8
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 1.1e-66 257.7 172 72.7
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 1.1e-66 257.7 173 69.4
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 1.1e-66 257.7 173 71.7
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 2.5e-66 256.5 172 72.1
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 2.5e-66 256.5 172 72.1
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 3.2e-66 256.1 172 71.5
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 3.2e-66 256.1 173 71.7
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 4.2e-66 255.8 173 69.9
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 7.1e-66 255.0 171 72.5
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 9.3e-66 254.6 172 71.5
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 1.2e-65 254.2 172 71.5
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 1.2e-65 254.2 172 71.5
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 1.6e-65 253.8 172 70.9
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 2.1e-65 253.4 172 71.5
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 2.1e-65 253.4 172 70.9
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 2.7e-65 253.1 172 71.5
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 2.7e-65 253.1 172 71.5
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 2.7e-65 253.1 172 71.5
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 3.5e-65 252.7 172 70.3
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 3.5e-65 252.7 173 70.5
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 3.5e-65 252.7 172 69.2
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 4.6e-65 252.3 172 70.3
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 4.6e-65 252.3 172 70.3
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 4.6e-65 252.3 172 70.9
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 6.0e-65 251.9 172 70.9
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 7.9e-65 251.5 172 70.3
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 1.0e-64 251.1 172 70.9
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 1.8e-64 250.4 172 69.8
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 3.9e-64 249.2 172 69.8
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 4.3e-63 245.7 168 70.2
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 4.8e-62 242.3 172 69.8
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 1.1e-61 241.1 161 72.0
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 2.4e-61 240.0 150 77.3
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 4.1e-61 239.2 172 68.0
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 5.3e-61 238.8 170 67.6
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 9.0e-61 238.0 172 66.3
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 2.0e-60 236.9 172 69.2
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 2.0e-60 236.9 172 65.7
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 1.9e-55 220.3 172 64.0
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 5.7e-55 218.8 170 61.8
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 5.7e-55 218.8 170 62.4
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 3.7e-54 216.1 173 64.7
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 3.4e-52 209.5 147 68.0
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 5.0e-51 205.7 139 70.5
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 1.1e-50 204.5 150 66.0
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 4.6e-49 199.1 219 50.2
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 5.7e-47 192.2 173 56.6
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 1.1e-37 161.4 149 56.4
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 3.8e-35 152.9 190 45.8
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 1.2e-33 147.9 145 59.3
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 4.7e-33 146.0 170 46.5
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.4e-32 144.4 90 73.3
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 5.2e-32 142.5 89 73.0
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 1.5e-31 141.0 110 60.0
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 9.7e-31 138.3 90 70.0
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 7.2e-26 122.1 171 39.8
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 2.8e-22 110.2 170 37.6
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.1e-21 108.2 61 82.0
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 2.3e-19 100.5 77 63.6
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 3.2e-18 96.7 111 49.5
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 9.5e-18 95.1 67 68.7
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 9.5e-18 95.1 175 34.3
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 2.1e-17 94.0 54 77.8
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 1.8e-16 90.9 69 63.8
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 2.6e-15 87.0 57 71.9
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 4.4e-15 86.3 70 61.4
CDE10G0014 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 8.3e-14 82.0 45 82.2
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 3.8e-11 73.2 55 61.8
SEGI_20653 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 6.1e-09 65.9 57 56.1
AagrBONN_evm.TU.Sc2ySwM_117.296 Anthoceros agrestis HOM05D006633 ORTHO05D008259 1.7e-06 57.8 60 46.7


User provided reference genes

Program Settings