Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.8e-164 582.4 275 100.0
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.9e-135 485.0 270 83.7
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.1e-132 474.9 270 83.0
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.2e-131 473.4 270 81.5
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.7e-131 470.7 271 81.9
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.3e-130 469.9 274 81.8
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.7e-130 469.5 270 83.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 8.5e-130 467.2 270 81.9
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.1e-129 466.8 270 81.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.9e-129 466.1 270 81.1
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.5e-129 465.7 270 81.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.5e-129 465.7 270 81.5
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 3.2e-129 465.3 270 82.6
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.2e-129 464.2 270 80.7
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 9.4e-129 463.8 270 80.7
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 9.4e-129 463.8 274 80.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.1e-128 462.6 274 80.7
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.7e-128 461.5 270 80.7
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 4.7e-128 461.5 270 81.5
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.0e-127 460.3 272 81.2
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.0e-127 460.3 270 80.0
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.8e-127 459.5 270 80.7
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.3e-127 459.1 273 81.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.9e-127 458.4 275 79.3
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.8e-127 457.2 270 80.0
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.0e-126 456.1 271 80.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.0e-126 456.1 270 80.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.6e-126 455.7 270 79.6
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.3e-126 455.3 270 79.6
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.3e-126 455.3 269 81.0
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 4.4e-126 454.9 270 80.0
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 4.4e-126 454.9 271 80.8
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.7e-126 454.5 271 78.6
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.7e-126 454.5 272 77.2
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 5.7e-126 454.5 270 80.4
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.7e-126 453.8 269 80.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.7e-125 453.0 274 79.6
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.2e-125 452.6 275 78.5
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.2e-125 452.6 270 80.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.7e-125 451.8 270 79.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 3.7e-125 451.8 270 79.3
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 3.7e-125 451.8 270 79.6
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.8e-125 451.4 269 78.8
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.2e-125 450.7 274 79.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 8.2e-125 450.7 308 72.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-124 450.3 269 78.8
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.4e-124 449.9 270 78.9
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.8e-124 449.5 269 78.8
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.8e-124 449.5 269 79.2
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.8e-124 449.5 270 78.5
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.8e-124 449.5 270 77.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.1e-124 448.7 269 78.8
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 4.1e-124 448.4 269 78.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.1e-124 448.4 270 79.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 5.3e-124 448.0 269 78.1
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.3e-124 448.0 270 79.3
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 7.0e-124 447.6 295 72.5
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 7.0e-124 447.6 275 77.8
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.1e-124 447.2 269 78.8
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.6e-123 446.4 269 78.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.6e-123 446.4 270 78.9
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.6e-123 445.7 270 76.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.6e-123 445.7 270 77.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.6e-123 445.7 270 77.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.5e-123 445.3 270 78.1
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.7e-122 443.0 270 78.1
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.2e-122 442.6 270 77.4
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.2e-122 442.6 264 79.2
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 5.0e-122 441.4 264 79.2
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 5.0e-122 441.4 270 77.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.9e-121 439.5 269 76.6
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.9e-121 439.5 270 76.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.9e-121 439.5 272 75.7
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-121 439.5 271 75.6
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-121 439.5 271 75.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-121 439.5 271 75.6
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.5e-121 439.1 270 77.8
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.5e-121 439.1 270 77.8
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.5e-121 438.0 270 77.4
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 7.2e-121 437.6 270 77.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.6e-120 436.4 266 77.8
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.1e-120 436.0 270 76.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.7e-120 435.6 270 77.4
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.4e-119 433.3 270 76.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.3e-119 432.6 300 71.7
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 3.0e-119 432.2 272 76.1
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 3.0e-119 432.2 270 75.6
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.0e-119 432.2 270 76.7
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 6.8e-119 431.0 274 74.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 6.8e-119 431.0 270 74.4
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 6.8e-119 431.0 270 75.9
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-118 430.3 270 75.6
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.5e-118 429.9 270 75.2
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.5e-118 429.9 270 74.4
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.0e-118 429.5 270 76.3
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.3e-117 426.8 270 73.3
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.1e-116 423.7 270 73.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.8e-114 415.2 270 74.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.5e-114 414.1 324 65.7
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 9.4e-113 410.6 270 73.3
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-112 409.8 270 73.0
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.6e-112 409.8 275 70.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.1e-112 409.5 271 72.3
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.8e-111 406.4 363 57.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 4.0e-111 405.2 270 71.5
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 6.8e-111 404.4 283 69.6
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.4e-110 402.1 272 70.2
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 3.1e-108 395.6 380 53.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.0e-106 390.6 269 68.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.1e-105 387.1 270 66.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.3e-105 385.6 269 66.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.5e-102 376.7 276 64.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.0e-102 376.3 276 62.0
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.4e-102 375.2 270 64.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.7e-102 374.8 241 71.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 4.9e-101 371.7 300 65.3
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.8e-96 355.9 183 89.1
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.1e-92 342.0 257 68.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 8.1e-88 327.8 253 61.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 7.5e-86 321.2 224 69.6
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.7e-85 318.9 164 87.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-81 307.4 271 57.6
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.3e-81 305.8 200 73.5
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.8e-79 298.1 267 56.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 2.2e-77 293.1 270 52.6
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 2.9e-69 266.2 183 68.9
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.5e-57 227.3 181 59.1
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.1e-52 211.1 112 86.6
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.6e-49 198.0 111 82.9
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 4.9e-45 185.7 106 80.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.1e-44 181.8 273 41.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-35 153.7 89 77.5
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.3e-33 146.4 72 90.3
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.3e-33 146.0 75 88.0
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.7e-33 144.8 89 78.7
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 9.4e-28 128.3 177 44.6
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 2.6e-22 110.2 88 60.2
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.9e-20 104.0 112 53.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.7e-19 99.4 62 72.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 3.0e-18 96.7 48 89.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.5e-17 94.4 55 74.5
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.3e-17 93.2 68 64.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.7e-17 91.7 83 59.0
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 7.0e-15 85.5 75 54.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.8e-08 63.5 41 68.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.2e-06 58.2 32 81.2


User provided reference genes

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