Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 6.0e-55 217.2 108 100.0
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 4.2e-40 167.9 101 72.3
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 5.5e-40 167.5 107 68.2
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 7.1e-40 167.2 108 73.1
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 7.1e-40 167.2 108 74.1
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.6e-39 166.0 104 72.1
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 4.6e-39 164.5 107 69.2
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 7.9e-39 163.7 108 71.3
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 7.9e-39 163.7 108 72.2
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 1.3e-38 162.9 95 78.9
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 3.9e-38 161.4 103 70.9
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 3.9e-38 161.4 102 72.5
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 8.7e-38 160.2 97 78.4
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 8.7e-38 160.2 97 77.3
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 8.7e-38 160.2 106 67.9
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.1e-37 159.8 105 72.4
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.1e-37 159.8 105 72.4
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 2.5e-37 158.7 108 67.6
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 2.5e-37 158.7 98 74.5
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.3e-37 158.3 105 71.4
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 3.3e-37 158.3 93 74.2
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 4.3e-37 157.9 108 68.5
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 4.3e-37 157.9 108 68.5
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 4.3e-37 157.9 93 77.4
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 5.7e-37 157.5 108 68.5
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 7.4e-37 157.1 108 66.7
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 9.7e-37 156.8 103 68.0
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.6e-36 156.0 106 68.9
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 2.2e-36 155.6 98 69.4
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 2.8e-36 155.2 103 67.0
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 2.8e-36 155.2 106 70.8
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 3.7e-36 154.8 108 65.7
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 3.7e-36 154.8 106 67.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 4.8e-36 154.5 89 77.5
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.4e-35 152.9 100 68.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.1e-35 151.8 83 77.1
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 4.1e-35 151.4 99 72.7
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 4.1e-35 151.4 99 71.7
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 5.3e-35 151.0 104 67.3
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 5.3e-35 151.0 100 67.0
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.2e-34 149.8 102 64.7
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.2e-34 149.8 102 65.7
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 3.4e-34 148.3 95 70.5
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 4.5e-34 147.9 108 64.8
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 7.6e-34 147.1 103 67.0
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 7.6e-34 147.1 99 66.7
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 2.2e-33 145.6 100 65.0
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 2.9e-33 145.2 108 65.7
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 2.9e-33 145.2 96 67.7
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.9e-33 145.2 104 63.5
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 2.9e-33 145.2 90 72.2
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 3.8e-33 144.8 102 65.7
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 3.8e-33 144.8 97 70.1
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 3.8e-33 144.8 98 64.3
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 5.0e-33 144.4 107 65.4
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 5.0e-33 144.4 100 68.0
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 8.5e-33 143.7 93 66.7
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.1e-32 143.3 109 60.6
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 1.4e-32 142.9 97 70.1
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 1.4e-32 142.9 103 65.0
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 1.4e-32 142.9 100 67.0
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 2.5e-32 142.1 98 67.3
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 4.2e-32 141.4 91 68.1
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 5.5e-32 141.0 98 71.4
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 1.2e-31 139.8 97 64.9
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.7e-31 138.7 93 66.7
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 4.6e-31 137.9 98 62.2
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 3.9e-30 134.8 84 66.7
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 5.1e-30 134.4 103 57.3
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 5.1e-30 134.4 92 69.6
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 6.7e-30 134.0 95 62.1
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 6.7e-30 134.0 103 57.3
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 6.7e-30 134.0 95 62.1
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 6.7e-30 134.0 100 65.0
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 6.7e-30 134.0 91 67.0
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 8.8e-30 133.7 98 59.2
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.1e-29 133.3 79 69.6
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 1.5e-29 132.9 79 69.6
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 1.9e-29 132.5 82 70.7
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.5e-29 132.1 79 69.6
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 3.3e-29 131.7 83 67.5
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 3.3e-29 131.7 83 67.5
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 3.3e-29 131.7 83 67.5
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 3.3e-29 131.7 83 67.5
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 3.3e-29 131.7 83 67.5
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 3.3e-29 131.7 79 68.4
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 3.3e-29 131.7 105 63.8
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.3e-29 131.3 79 68.4
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 4.3e-29 131.3 79 68.4
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 4.3e-29 131.3 79 68.4
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 4.3e-29 131.3 79 67.1
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 5.7e-29 131.0 79 68.4
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 5.7e-29 131.0 103 56.3
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 5.7e-29 131.0 103 56.3
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 1.7e-28 129.4 103 58.3
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 2.2e-28 129.0 79 67.1
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 2.2e-28 129.0 79 67.1
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.8e-28 128.6 95 58.9
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.8e-27 125.9 77 68.8
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 2.4e-27 125.6 77 66.2
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 2.4e-27 125.6 77 66.2
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 2.4e-27 125.6 77 66.2
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 4.1e-27 124.8 94 55.3
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 5.3e-27 124.4 103 53.4
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 9.1e-27 123.6 103 53.4
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 9.1e-27 123.6 103 53.4
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 1.5e-26 122.9 93 54.8
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 3.4e-26 121.7 103 52.4
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 2.9e-25 118.6 103 50.5
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 5.0e-25 117.9 83 67.5
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 5.0e-25 117.9 103 48.5
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.1e-24 116.7 103 50.5
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 3.2e-24 115.2 96 57.3
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 7.9e-23 110.5 59 78.0
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 5.1e-22 107.8 89 56.2
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 8.8e-22 107.1 79 54.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 8.8e-22 107.1 93 58.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 8.8e-22 107.1 93 58.1
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 2.8e-20 102.1 103 44.7
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 5.0e-17 91.3 97 45.4
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 9.4e-08 60.5 104 32.7
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.6e-07 58.5 101 31.7
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 6.1e-07 57.8 93 33.3
arahy.Tifrunner.gnm1.ann1.202QP6 Arachis hypogaea HOM05D000001 ORTHO05D000003 8.0e-07 57.4 32 75.0
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 8.0e-07 57.4 88 34.1
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 8.0e-07 57.4 93 28.0
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.4e-06 56.6 63 42.9
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 1.4e-06 56.6 98 34.7
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.8e-06 56.2 90 35.6
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 1.8e-06 56.2 57 45.6
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.8e-06 56.2 93 28.0
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 2.3e-06 55.8 97 37.1
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 2.3e-06 55.8 96 28.1
RcHm_v2.0_Chr5g0056191 Rosa chinensis HOM05D001848 ORTHO05D001295 4.0e-06 55.1 90 37.8
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 5.2e-06 54.7 89 41.6
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 6.7e-06 54.3 60 40.0
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.7e-06 54.3 93 33.3


User provided reference genes

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