Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 7.4e-150 533.9 274 100.0
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.7e-61 240.4 309 49.5
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 1.9e-57 226.9 293 48.1
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 3.3e-57 226.1 286 47.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 7.3e-57 224.9 180 65.6
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 2.8e-56 223.0 193 59.6
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 3.6e-56 222.6 158 70.9
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.1e-55 221.1 206 58.3
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 4.0e-55 219.2 220 54.1
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 5.2e-55 218.8 213 55.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 9.0e-55 218.0 305 46.2
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 9.0e-55 218.0 291 47.8
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.5e-54 217.2 180 62.8
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 1.5e-54 217.2 167 65.3
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 2.6e-54 216.5 186 57.5
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 9.9e-54 214.5 153 67.3
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.7e-53 213.8 303 46.2
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 2.2e-53 213.4 264 47.7
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 3.8e-53 212.6 209 55.5
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.8e-53 212.6 173 61.3
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.9e-53 212.2 151 65.6
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.4e-53 211.8 303 45.9
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 6.4e-53 211.8 296 46.6
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 6.4e-53 211.8 150 67.3
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.1e-52 211.1 303 45.5
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.1e-52 211.1 165 63.6
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 2.4e-52 209.9 146 71.2
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.4e-52 209.9 293 44.7
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 3.2e-52 209.5 164 64.0
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 5.4e-52 208.8 173 64.2
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 7.1e-52 208.4 158 66.5
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 7.1e-52 208.4 236 49.2
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.2e-51 207.6 265 44.2
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 1.6e-51 207.2 202 54.5
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.6e-51 207.2 238 50.0
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.6e-51 207.2 265 44.2
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 2.1e-51 206.8 292 45.5
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 3.5e-51 206.1 268 46.3
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 4.6e-51 205.7 161 63.4
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 4.6e-51 205.7 186 57.5
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 6.0e-51 205.3 176 59.7
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 6.0e-51 205.3 278 46.4
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.3e-50 204.1 146 67.8
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 5.1e-50 202.2 287 46.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 6.6e-50 201.8 183 56.3
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.9e-49 200.3 183 55.7
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 2.5e-49 199.9 285 44.9
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.5e-49 199.9 189 57.7
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 4.3e-49 199.1 220 52.3
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 5.6e-49 198.7 179 58.1
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 9.6e-49 198.0 173 57.2
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 9.6e-49 198.0 168 63.1
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.6e-48 196.1 248 45.2
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 6.9e-47 191.8 222 47.7
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 9.0e-47 191.4 204 51.5
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 2.0e-46 190.3 281 45.2
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 3.4e-46 189.5 223 48.0
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 9.9e-46 188.0 144 66.0
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.8e-45 186.0 168 60.1
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 3.8e-45 186.0 168 60.1
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 6.4e-45 185.3 164 58.5
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.1e-44 184.5 189 52.4
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.6e-43 180.6 168 58.3
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.6e-43 180.6 232 47.0
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 2.7e-43 179.9 172 54.7
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 3.5e-43 179.5 157 56.7
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 7.9e-43 178.3 232 46.6
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 7.9e-43 178.3 232 46.6
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-42 177.9 178 53.4
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.0e-42 177.9 178 53.4
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.8e-42 177.2 165 55.8
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 3.9e-42 176.0 164 56.7
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.9e-42 176.0 140 62.1
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 8.7e-42 174.9 169 55.0
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.1e-41 174.5 169 53.8
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.1e-41 174.5 166 55.4
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 7.4e-41 171.8 176 54.0
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.6e-40 170.6 168 55.4
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.1e-40 170.2 167 56.3
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.1e-40 170.2 190 47.4
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 4.8e-40 169.1 167 55.1
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 6.2e-40 168.7 168 54.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 6.2e-40 168.7 152 52.6
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.1e-39 167.9 258 43.8
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 1.8e-39 167.2 166 53.6
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 4.0e-39 166.0 165 52.7
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 4.5e-38 162.5 165 52.1
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 7.6e-38 161.8 180 49.4
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 2.2e-37 160.2 260 39.2
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 3.8e-37 159.5 159 49.7
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 4.9e-37 159.1 257 44.0
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 2.5e-33 146.7 117 60.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 7.4e-33 145.2 117 59.8
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 2.1e-32 143.7 117 59.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.2e-32 141.7 260 40.0
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 2.4e-31 140.2 117 60.7
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 6.9e-31 138.7 183 47.0
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 1.2e-30 137.9 117 55.6
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.2e-30 137.9 206 39.8
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 1.5e-30 137.5 124 57.3
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.3e-29 134.4 166 44.6
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 2.7e-27 126.7 115 56.5
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 6.9e-23 112.1 122 47.5
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.7e-21 107.5 143 46.9
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.9e-20 104.0 225 36.0
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 3.7e-16 89.7 146 38.4
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.4e-15 87.8 67 62.7
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 4.1e-15 86.3 81 54.3
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 2.6e-14 83.6 152 36.8
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 1.2e-11 74.7 132 38.6
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.1e-11 73.9 86 51.2
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 3.0e-10 70.1 39 82.1
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 2.0e-09 67.4 98 44.9
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.8e-08 63.5 51 62.7
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.4e-07 61.2 303 26.4


User provided reference genes

Program Settings