Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 7.9e-183 643.7 327 100.0
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-80 304.3 322 55.9
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-80 303.5 330 54.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 7.3e-80 301.6 331 55.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.1e-79 300.1 324 55.9
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.6e-79 299.3 330 54.2
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.2e-77 294.3 325 55.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-77 294.3 330 53.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.5e-77 292.4 321 53.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.3e-76 290.8 327 52.3
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.9e-76 288.9 330 53.3
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.9e-72 276.9 325 53.5
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.4e-72 275.0 319 53.0
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.3e-71 274.2 328 50.9
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.1e-70 269.6 359 47.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.6e-69 265.0 340 49.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.7e-68 263.8 332 49.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.2e-68 263.5 331 51.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.8e-68 262.7 325 49.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.5e-68 261.9 321 50.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 6.5e-68 261.9 336 50.0
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-67 261.2 342 48.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 5.5e-67 258.8 329 48.3
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 5.5e-67 258.8 329 48.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.2e-66 257.7 329 48.9
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.2e-66 257.7 337 48.1
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.6e-66 257.3 324 51.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.6e-66 257.3 334 49.1
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.6e-66 257.3 345 49.9
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.6e-66 255.8 330 48.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.0e-66 255.4 329 48.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.0e-65 253.1 334 46.4
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 6.7e-65 251.9 337 50.4
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.9e-64 250.4 360 46.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.7e-64 248.8 366 45.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.8e-63 246.5 328 47.6
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 3.7e-63 246.1 360 45.3
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 8.2e-63 245.0 362 47.0
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 8.2e-63 245.0 368 44.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-62 244.6 365 44.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.4e-62 243.4 360 44.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.4e-62 243.4 341 46.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.1e-62 243.0 331 48.6
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.1e-62 243.0 364 43.7
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.0e-62 242.7 335 48.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 4.0e-62 242.7 333 48.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.3e-62 242.3 335 48.1
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.0e-62 241.5 363 44.4
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.5e-61 240.7 336 48.2
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.6e-61 240.0 333 48.3
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.4e-61 239.6 333 45.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.8e-61 238.8 333 48.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.3e-60 237.7 331 48.3
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 6.5e-60 235.3 344 44.8
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.1e-59 234.6 332 45.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-59 234.6 364 44.0
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.5e-59 233.4 359 42.9
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.2e-59 233.0 355 44.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 5.5e-59 232.3 326 46.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.1e-59 231.9 342 49.7
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 7.1e-59 231.9 355 42.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.2e-58 231.1 342 48.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 6.1e-58 228.8 332 47.9
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 7.9e-58 228.4 335 45.4
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.9e-57 226.1 325 48.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.1e-57 225.7 333 45.6
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 4.3e-56 222.6 339 44.5
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.3e-56 222.6 333 47.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.7e-56 222.2 330 45.5
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.2e-55 220.3 341 43.7
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.8e-55 219.2 302 45.7
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.8e-55 219.2 302 45.7
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.2e-55 218.4 332 44.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-54 217.6 332 44.6
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.8e-54 217.2 319 44.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.4e-54 216.9 347 42.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.4e-54 216.9 348 43.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.1e-54 216.5 273 49.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 5.3e-54 215.7 335 42.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 9.0e-54 214.9 330 41.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.6e-53 213.4 331 42.9
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 5.9e-53 212.2 360 42.5
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 7.7e-53 211.8 328 44.2
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.3e-52 211.1 323 44.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.3e-52 211.1 330 41.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.8e-52 209.5 360 42.2
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.0e-52 209.1 331 44.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.5e-52 208.8 278 47.5
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 8.5e-52 208.4 326 44.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 8.5e-52 208.4 321 43.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-51 207.6 333 43.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.4e-51 207.6 333 43.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.5e-51 206.8 329 43.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.6e-50 204.1 341 41.6
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.7e-50 203.4 333 42.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.6e-50 203.0 328 43.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 3.6e-50 203.0 326 44.5
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 7.9e-50 201.8 336 43.8
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 7.9e-50 201.8 333 42.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 7.9e-50 201.8 289 43.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 7.9e-50 201.8 347 42.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.1e-48 198.0 334 42.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-48 198.0 311 40.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.5e-48 197.6 354 41.0
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.5e-48 197.6 317 42.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.0e-48 197.2 317 42.3
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.5e-48 196.8 332 42.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.3e-48 196.1 332 42.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.5e-45 187.6 339 40.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.5e-45 187.6 339 40.4
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-41 174.1 334 38.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 8.8e-41 171.8 334 38.6
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 8.8e-41 171.8 334 38.6
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.0e-40 170.6 358 37.4
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.8e-39 166.8 351 33.0
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.5e-37 161.0 252 40.9
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.0e-36 156.0 231 42.9
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 6.5e-36 155.6 224 41.1
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.1e-35 154.8 226 40.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.5e-35 154.5 224 41.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.1e-34 150.6 267 43.8
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.7e-34 149.4 210 49.5
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.7e-34 149.4 246 41.1
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.0e-33 148.3 241 45.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.4e-33 147.9 228 40.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.0e-33 146.7 207 41.1
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.0e-33 146.4 260 38.1
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.5e-32 144.4 197 44.2
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.0e-32 144.1 242 37.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.6e-32 143.7 250 39.6
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.6e-32 143.7 275 39.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.7e-32 142.5 264 35.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.3e-31 141.4 220 39.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 4.8e-31 139.4 261 38.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 8.2e-31 138.7 370 34.6
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.1e-30 138.3 254 37.0
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.4e-30 137.1 189 42.3
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.1e-30 136.7 198 41.4
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 7.0e-30 135.6 260 38.5
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.1e-30 135.2 251 40.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.6e-29 133.7 264 35.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.6e-29 133.7 207 38.2
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.5e-29 132.9 214 36.9
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.0e-28 131.7 223 40.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.0e-28 131.7 343 31.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.3e-28 131.3 314 34.4
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.8e-28 129.8 235 34.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 5.0e-28 129.4 222 37.4
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.0e-28 129.4 205 39.5
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 5.0e-28 129.4 264 36.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.1e-27 128.3 194 44.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.2e-27 126.7 216 35.2
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.0e-24 117.5 358 30.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 7.5e-24 115.5 373 30.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.4e-22 109.4 216 33.3
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.5e-19 99.4 266 35.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 5.5e-19 99.4 131 42.0
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.8e-14 84.3 154 35.1
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.8e-14 84.3 154 35.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.8e-12 76.6 279 28.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.2e-11 73.2 110 40.0
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.5e-11 72.0 148 41.2
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.5e-11 72.0 357 26.1
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.1e-10 70.9 98 51.0
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 3.6e-10 70.1 51 58.8
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.3e-09 67.4 123 37.4
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.6e-08 63.9 48 58.3
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.4e-08 63.5 98 42.9


User provided reference genes

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