Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.5e-33 145.6 72 100.0
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.3e-18 95.9 68 69.1
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.7e-18 93.2 67 64.2
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.7e-18 93.2 67 64.2
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.5e-17 92.4 67 64.2
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.9e-17 92.0 66 62.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.5e-17 91.7 67 61.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.3e-17 90.9 67 62.7
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 5.7e-17 90.5 67 61.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.3e-16 89.4 65 63.1
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.6e-16 89.0 66 60.6
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 2.2e-16 88.6 63 65.1
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 6.3e-16 87.0 65 60.0
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 6.3e-16 87.0 66 59.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.1e-15 86.3 61 63.9
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.1e-15 86.3 61 63.9
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 2.4e-15 85.1 63 61.9
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 2.4e-15 85.1 63 61.9
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 3.1e-15 84.7 67 56.7
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 4.1e-15 84.3 62 62.9
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 4.1e-15 84.3 63 58.7
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.3e-15 84.0 70 57.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.3e-15 84.0 66 59.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.3e-15 84.0 66 59.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.3e-15 84.0 63 61.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 5.3e-15 84.0 62 62.9
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 5.3e-15 84.0 63 60.3
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.9e-15 83.6 63 60.3
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 6.9e-15 83.6 66 57.6
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 6.9e-15 83.6 66 56.1
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 6.9e-15 83.6 65 58.5
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 9.0e-15 83.2 62 62.9
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.0e-15 83.2 65 55.4
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 9.0e-15 83.2 61 59.0
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.2e-14 82.8 62 62.9
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.2e-14 82.8 66 59.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.2e-14 82.8 65 58.5
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.5e-14 82.4 65 56.9
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-14 82.4 59 64.4
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.5e-14 82.4 59 62.7
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.0e-14 82.0 63 58.7
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.0e-14 82.0 59 62.7
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.6e-14 81.6 62 59.7
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 51.5
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.6e-14 81.6 68 51.5
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.4e-14 81.3 65 53.8
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.4e-14 81.3 63 58.7
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 4.5e-14 80.9 69 55.1
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.5e-14 80.9 62 61.3
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.5e-14 80.9 62 61.3
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 4.5e-14 80.9 63 57.1
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 4.5e-14 80.9 65 53.8
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.5e-14 80.9 62 61.3
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 5.9e-14 80.5 65 56.9
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.9e-14 80.5 59 61.0
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 5.9e-14 80.5 62 64.5
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 5.9e-14 80.5 66 54.5
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.7e-14 80.1 59 59.3
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.7e-14 80.1 62 61.3
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 7.7e-14 80.1 65 56.9
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-13 79.7 68 57.4
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.0e-13 79.7 65 56.9
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-13 79.7 81 48.1
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 61.3
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-13 79.3 59 59.3
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.3e-13 79.3 59 59.3
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-13 79.3 65 50.8
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-13 79.3 59 61.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.3e-13 79.3 59 61.0
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.7e-13 79.0 59 62.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.7e-13 79.0 65 56.9
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.7e-13 79.0 58 65.5
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.7e-13 79.0 62 62.9
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.7e-13 79.0 63 60.3
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.2e-13 78.6 58 63.8
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.2e-13 78.6 57 61.4
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.2e-13 78.6 57 63.2
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.9e-13 78.2 65 56.9
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.9e-13 78.2 65 56.9
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.9e-13 78.2 62 58.1
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 3.8e-13 77.8 65 55.4
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 3.8e-13 77.8 65 56.9
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.8e-13 77.8 70 52.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.8e-13 77.8 60 61.7
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.8e-13 77.8 70 52.9
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.8e-13 77.8 59 57.6
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 5.0e-13 77.4 65 55.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 5.0e-13 77.4 65 55.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 5.0e-13 77.4 65 55.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.0e-13 77.4 70 52.9
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 6.5e-13 77.0 65 56.9
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.5e-13 77.0 66 54.5
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.5e-13 77.0 66 54.5
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 6.5e-13 77.0 65 55.4
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 8.5e-13 76.6 62 56.5
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.4e-12 75.9 65 53.8
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-12 75.9 66 50.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.9e-12 75.5 65 53.8
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.9e-12 75.5 62 54.8
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.9e-12 75.5 59 59.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.9e-12 75.5 54 64.8
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-12 75.5 67 50.7
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.5e-12 75.1 65 55.4
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.5e-12 75.1 65 55.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.5e-12 75.1 62 54.8
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.5e-12 75.1 67 47.8
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.5e-12 75.1 63 54.0
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.5e-12 75.1 58 62.1
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.2e-12 74.7 57 59.6
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 4.2e-12 74.3 67 50.7
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.5e-12 73.9 56 60.7
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.5e-12 73.9 62 56.5
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.5e-12 73.9 62 56.5
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.5e-12 73.9 56 60.7
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 7.2e-12 73.6 65 50.8
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 9.4e-12 73.2 63 55.6
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.2e-11 72.8 62 54.8
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.6e-11 72.4 58 58.6
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.1e-11 72.0 62 59.7
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.1e-11 72.0 62 56.5
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.7e-11 71.6 69 50.7
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 2.7e-11 71.6 65 53.8
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 4.6e-11 70.9 65 49.2
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 4.6e-11 70.9 65 49.2
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 4.6e-11 70.9 65 49.2
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 4.6e-11 70.9 62 56.5
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 6.1e-11 70.5 59 59.3
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.1e-11 70.5 51 62.7
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 7.9e-11 70.1 65 49.2
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 7.9e-11 70.1 65 49.2
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 7.9e-11 70.1 59 55.9
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.3e-10 68.6 63 50.8
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.3e-10 68.6 62 51.6
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 3.0e-10 68.2 67 47.8
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 6.7e-10 67.0 62 51.6
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 6.7e-10 67.0 62 51.6
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.7e-10 67.0 53 56.6
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 6.7e-10 67.0 62 54.8
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.5e-09 65.9 51 58.8
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.5e-09 65.1 62 48.4
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 3.3e-09 64.7 61 47.5
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 3.3e-09 64.7 59 49.2
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 5.7e-09 63.9 52 53.8
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 7.4e-09 63.5 64 53.1
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 7.4e-09 63.5 62 46.8
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 9.7e-09 63.2 59 47.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.7e-09 63.2 59 52.5
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.7e-08 62.4 59 49.2
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 1.7e-08 62.4 59 47.5
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 2.2e-08 62.0 58 51.7
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.8e-08 61.6 58 51.7
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.7e-08 61.2 58 50.0
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 3.7e-08 61.2 58 50.0
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 4.8e-08 60.8 39 76.9
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 6.3e-08 60.5 59 50.8
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 6.3e-08 60.5 58 50.0
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.1e-07 59.7 58 50.0
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.4e-07 59.3 55 52.7
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 2.4e-07 58.5 58 48.3
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 4.1e-07 57.8 59 45.8
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.1e-07 57.8 62 48.4
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 4.1e-07 57.8 58 51.7
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 6.9e-07 57.0 59 42.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.0e-06 55.5 46 54.3
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.9e-06 53.9 53 45.3


User provided reference genes

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