Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 0.0e+00 1491.5 781 100.0
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.1e-133 480.7 825 43.2
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 6.6e-127 459.1 890 39.7
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.2e-125 454.9 825 42.5
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.9e-118 431.0 796 39.7
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 3.9e-111 406.8 791 39.2
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 3.3e-110 403.7 782 38.7
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 3.2e-105 387.1 805 38.4
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.7e-103 381.3 797 37.0
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 3.0e-103 380.6 814 38.1
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 6.6e-103 379.4 820 38.2
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 1.1e-100 372.1 833 35.5
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 6.9e-100 369.4 773 37.5
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 8.9e-100 369.0 778 36.5
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 3.2e-97 360.5 792 36.4
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.7e-96 357.5 799 36.5
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.7e-95 354.8 798 36.1
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 2.3e-95 354.4 793 35.9
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.5e-94 351.7 919 35.6
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 2.8e-93 347.4 780 37.6
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 1.4e-92 345.1 802 34.3
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.4e-92 345.1 795 36.1
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.8e-92 344.7 798 36.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 2.4e-92 344.4 811 37.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.4e-92 344.4 563 41.4
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 6.9e-92 342.8 802 37.5
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.0e-91 341.3 783 36.0
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 5.8e-91 339.7 822 34.2
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.6e-91 339.3 794 35.5
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 2.2e-90 337.8 787 36.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 6.4e-90 336.3 804 33.7
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 8.4e-90 335.9 789 35.6
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 3.2e-89 334.0 850 34.4
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 7.1e-89 332.8 784 34.6
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 2.1e-88 331.3 761 36.7
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.9e-88 329.3 821 35.0
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 3.0e-87 327.4 803 34.4
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.1e-86 325.5 570 40.0
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.4e-84 318.5 818 33.3
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.8e-84 318.2 821 35.4
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 2.4e-84 317.8 768 33.6
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.2e-83 315.5 550 39.6
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 9.9e-83 312.4 855 33.3
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 6.4e-82 309.7 783 34.0
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 2.4e-81 307.8 533 40.9
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 2.4e-81 307.8 746 33.5
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 2.4e-81 307.8 793 34.3
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.6e-80 305.1 773 33.9
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 6.0e-80 303.1 790 33.2
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.3e-79 301.2 758 33.9
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 3.3e-78 297.4 609 38.9
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 4.8e-77 293.5 582 37.6
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 1.8e-76 291.6 879 31.1
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.7e-74 285.0 778 31.9
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 6.5e-74 283.1 623 35.0
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 3.2e-73 280.8 587 34.8
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 4.2e-73 280.4 867 31.9
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 5.5e-73 280.0 510 38.8
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 3.5e-72 277.3 601 37.6
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.3e-71 274.6 782 33.0
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 5.1e-71 273.5 904 29.0
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 8.7e-71 272.7 750 32.8
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 1.1e-70 272.3 579 37.5
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 2.5e-70 271.2 810 33.2
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 4.3e-70 270.4 782 32.5
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 4.3e-70 270.4 798 32.2
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 7.4e-70 269.6 803 32.9
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.6e-69 268.5 620 36.1
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 3.7e-69 267.3 814 33.5
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 8.2e-69 266.2 797 34.1
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.1e-68 265.8 905 29.4
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.4e-68 265.4 828 29.6
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 4.1e-68 263.8 806 31.3
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 5.3e-68 263.5 792 33.0
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 6.9e-68 263.1 808 32.3
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.7e-66 258.5 781 33.0
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 9.3e-65 252.7 605 35.7
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.3e-63 248.8 780 31.8
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 5.7e-62 243.4 279 47.7
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.4e-60 238.8 602 33.4
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.6e-59 234.6 746 32.3
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 4.2e-57 227.3 760 30.9
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 2.7e-56 224.6 778 29.3
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 7.9e-56 223.0 819 30.2
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.4e-55 222.2 801 30.0
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.4e-55 222.2 801 30.0
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.1e-54 219.2 575 32.2
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 1.4e-52 212.2 536 34.0
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 5.3e-52 210.3 757 30.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 2.0e-51 208.4 761 31.0
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.0e-50 206.1 836 29.3
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.3e-50 205.7 755 29.8
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.3e-50 205.7 759 30.0
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 2.2e-50 204.9 840 27.6
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 5.0e-50 203.8 793 29.1
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.1e-46 192.6 606 32.0
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 5.7e-46 190.3 669 31.1
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.3e-45 189.1 586 30.9
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 6.3e-45 186.8 626 31.0
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 8.2e-45 186.4 652 28.7
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.1e-44 186.0 586 30.0
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 1.8e-44 185.3 642 31.5
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 9.1e-44 183.0 566 31.6
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 3.8e-42 177.6 537 30.5
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 5.0e-42 177.2 552 32.2
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.0e-39 169.5 574 29.6
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.0e-34 150.6 169 49.1
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 4.4e-22 110.9 157 43.3
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.9e-10 71.2 114 42.1
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 6.6e-10 70.5 399 23.1
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.1e-09 69.7 379 22.7
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.1e-09 69.7 379 22.7
Mapoly0003s0122 Marchantia polymorpha HOM05D020720 ORTHO05D007477 8.0e-08 63.5 135 31.1
Ah.10g038790 Amaranthus hybridus HOM05D001393 ORTHO05D007477 3.4e-06 58.2 58 58.6


User provided reference genes

Program Settings