Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008980 Simmondsia chinensis HOM05D000926 ORTHO05D000707 2.3e-57 225.3 112 100.0
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 2.2e-12 75.9 102 46.1
Manes.01G105900 Manihot esculenta HOM05D000926 ORTHO05D000707 5.0e-12 74.7 103 40.8
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 1.1e-11 73.6 118 41.5
CiPaw.03G080200 Carya illinoinensis HOM05D000926 ORTHO05D000707 1.5e-11 73.2 92 47.8
EL10Ac2g04400 Beta vulgaris HOM05D000926 ORTHO05D000707 2.5e-11 72.4 102 40.2
SalBow1G7500 Salvia bowleyana HOM05D000926 ORTHO05D000707 3.2e-11 72.0 97 44.3
TAR374G1048 Trochodendron aralioides HOM05D000926 ORTHO05D000707 3.2e-11 72.0 96 46.9
ATR0691G108 Amborella trichopoda HOM05D000926 ORTHO05D000707 4.2e-11 71.6 93 46.2
Manes.02G062400 Manihot esculenta HOM05D000926 ORTHO05D000707 5.5e-11 71.2 109 39.4
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 7.2e-11 70.9 96 42.7
Sabra04G0073900 Salix brachista HOM05D000926 ORTHO05D000707 9.4e-11 70.5 100 41.0
TAR629G1973 Trochodendron aralioides HOM05D000926 ORTHO05D000707 9.4e-11 70.5 92 50.0
MSTRG.2960 Avicennia marina HOM05D000926 ORTHO05D000707 1.2e-10 70.1 106 42.5
Cfa007731 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.6e-10 69.7 93 46.2
Lalb_Chr10g0092481 Lupinus albus HOM05D000926 ORTHO05D000707 2.1e-10 69.3 110 38.2
GSVIVG01036505001 Vitis vinifera HOM05D000926 ORTHO05D000707 2.1e-10 69.3 97 42.3
CSS0045695 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 2.7e-10 68.9 81 45.7
AUR62023120 Chenopodium quinoa HOM05D000926 ORTHO05D000707 3.6e-10 68.6 97 45.4
Ah.16g100770 Amaranthus hybridus HOM05D000926 ORTHO05D000707 4.7e-10 68.2 97 43.3
Nitab4.5_0002171g0020 Nicotiana tabacum HOM05D000926 ORTHO05D000707 6.1e-10 67.8 96 41.7
Cfa007729 Carpinus fangiana HOM05D000926 ORTHO05D000707 8.0e-10 67.4 100 42.0
Oeu032853.1 Olea europaea HOM05D000926 ORTHO05D000707 8.0e-10 67.4 97 41.2
Potri.017G107300 Populus trichocarpa HOM05D000926 ORTHO05D000707 8.0e-10 67.4 84 44.0
AUR62009442 Chenopodium quinoa HOM05D000926 ORTHO05D000368 1.4e-09 66.6 96 44.8
Haze_14349 Corylus avellana HOM05D000926 ORTHO05D000707 1.4e-09 66.6 101 41.6
MBI15_g03197_MAGBIO Magnolia biondii HOM05D000926 ORTHO05D000707 1.4e-09 66.6 94 43.6
Sc10g0000430 Simmondsia chinensis HOM05D000926 ORTHO05D000707 1.4e-09 66.6 77 45.5
Thecc.04G113000 Theobroma cacao HOM05D000926 ORTHO05D000707 1.4e-09 66.6 78 46.2
Nitab4.5_0005612g0030 Nicotiana tabacum HOM05D000926 ORTHO05D000707 1.8e-09 66.2 98 40.8
Potri.017G107200 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.8e-09 66.2 101 41.6
Hma1.2p1_0588F.1_g184550 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 4.0e-09 65.1 100 44.0
PGSC0003DMG400001476 Solanum tuberosum HOM05D000926 ORTHO05D000707 4.0e-09 65.1 101 43.6
Nn3g17603 Nelumbo nucifera HOM05D000926 ORTHO05D000707 5.2e-09 64.7 102 40.2
Sabra17G0090100 Salix brachista HOM05D000926 ORTHO05D000707 5.2e-09 64.7 93 40.9
Actinidia26283 Actinidia chinensis HOM05D000926 ORTHO05D000707 6.8e-09 64.3 96 42.7
Hma1.2p1_2231F.1_g317580 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 6.8e-09 64.3 91 44.0
Lju361C12T10 Lonicera japonica HOM05D000926 ORTHO05D000707 6.8e-09 64.3 92 42.4
HanXRQChr09g0263271 Helianthus annuus HOM05D000926 ORTHO05D000707 1.2e-08 63.5 88 44.3
Lalb_Chr10g0092471 Lupinus albus HOM05D000926 ORTHO05D000707 1.2e-08 63.5 96 43.8
Potri.017G107400 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.2e-08 63.5 83 44.6
Aqoxy3G00594 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 1.5e-08 63.2 79 48.1
AUR62023127 Chenopodium quinoa HOM05D000926 ORTHO05D000707 1.5e-08 63.2 117 38.5
Duzib138G1671 Durio zibethinus HOM05D000926 ORTHO05D000707 1.5e-08 63.2 96 39.6
ECA232G0239 Erigeron canadensis HOM05D000926 ORTHO05D000707 1.5e-08 63.2 86 40.7
Hma1.2p1_2231F.1_g317570 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 1.5e-08 63.2 78 48.7
Lsat_1_v5_gn_8_66661 Lactuca sativa HOM05D000926 ORTHO05D000707 1.5e-08 63.2 121 40.5
Lj1g0009060 Lotus japonicus HOM05D000926 ORTHO05D000707 1.5e-08 63.2 108 40.7
CAN.G497.36 Capsicum annuum HOM05D000926 ORTHO05D000707 2.6e-08 62.4 81 43.2
Migut.H00568 Erythranthe guttata HOM05D000926 ORTHO05D000707 3.4e-08 62.0 97 38.1
FvH4_6g45911 Fragaria vesca HOM05D000926 ORTHO05D000707 3.4e-08 62.0 87 44.8
Cfa007730 Carpinus fangiana HOM05D000926 ORTHO05D000707 4.4e-08 61.6 108 42.6
Duzib211G0100 Durio zibethinus HOM05D000926 ORTHO05D000707 4.4e-08 61.6 97 40.2
Medtr0542s0020 Medicago truncatula HOM05D000926 ORTHO05D000707 4.4e-08 61.6 99 39.4
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 4.4e-08 61.6 97 37.1
Sabra17G0090200 Salix brachista HOM05D000926 ORTHO05D000707 4.4e-08 61.6 106 41.5
Solyc02g089450.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 4.4e-08 61.6 97 44.3
RcHm_v2.0_Chr2g0164101 Rosa chinensis HOM05D000926 ORTHO05D000707 5.7e-08 61.2 84 44.0
Glyma.08G254800 Glycine max HOM05D000926 ORTHO05D000707 7.5e-08 60.8 115 37.4
Oeu032854.1 Olea europaea HOM05D000926 ORTHO05D000707 7.5e-08 60.8 97 37.1
Sopen02g034200 Solanum pennellii HOM05D000926 ORTHO05D000707 7.5e-08 60.8 100 35.0
CSS0017323 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 9.8e-08 60.5 89 40.4
CAN.G93.43 Capsicum annuum HOM05D000926 ORTHO05D000707 9.8e-08 60.5 95 44.2
FAN05G2979 Fragaria x ananassa HOM05D000926 ORTHO05D000707 9.8e-08 60.5 107 41.1
Lalb_Chr23g0268101 Lupinus albus HOM05D000926 ORTHO05D000707 9.8e-08 60.5 97 42.3
Potri.004G108680 Populus trichocarpa HOM05D000926 ORTHO05D000707 9.8e-08 60.5 99 38.4
MSTRG.3384 Avicennia marina HOM05D000926 ORTHO05D000707 1.3e-07 60.1 77 41.6
Dinv38621 Davidia involucrata HOM05D000926 ORTHO05D000707 1.3e-07 60.1 92 42.4
ECA238G4493 Erigeron canadensis HOM05D000926 ORTHO05D000707 1.3e-07 60.1 100 37.0
Eucgr.J01439 Eucalyptus grandis HOM05D000926 ORTHO05D000707 1.3e-07 60.1 96 40.6
FAN05G2016 Fragaria x ananassa HOM05D000926 ORTHO05D000707 1.3e-07 60.1 87 43.7
HanXRQChr14g0439481 Helianthus annuus HOM05D000926 ORTHO05D000707 1.3e-07 60.1 99 36.4
Manes.02G062600 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-07 60.1 81 43.2
Phvul.008G023400 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 1.3e-07 60.1 112 41.1
Solyc02g089460.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 1.3e-07 60.1 100 35.0
SGA_v2.0_scaffold4G02343 Striga asiatica HOM05D000926 ORTHO05D000707 1.3e-07 60.1 92 40.2
arahy.Tifrunner.gnm1.ann1.DUC516 Arachis hypogaea HOM05D000926 ORTHO05D000707 1.7e-07 59.7 111 33.3
CAN.G982.28 Capsicum annuum HOM05D019957 ORTHO05D000707 1.7e-07 59.7 96 35.4
FAN02G4043 Fragaria x ananassa HOM05D000926 ORTHO05D000707 1.7e-07 59.7 99 39.4
Hma1.2p1_0588F.1_g184540 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 1.7e-07 59.7 91 39.6
CAN.G497.35 Capsicum annuum HOM05D000926 ORTHO05D000707 2.2e-07 59.3 98 37.8
Lsat_1_v5_gn_3_95661 Lactuca sativa HOM05D000926 ORTHO05D000707 2.2e-07 59.3 87 37.9
Duzib133G0632 Durio zibethinus HOM05D000926 ORTHO05D000707 2.8e-07 58.9 86 47.7
PGSC0003DMG400001478 Solanum tuberosum HOM05D000926 ORTHO05D000707 2.8e-07 58.9 96 39.6
Thecc.04G112900 Theobroma cacao HOM05D000926 ORTHO05D000707 2.8e-07 58.9 94 41.5
BcaC06g30841 Brassica carinata HOM05D000926 ORTHO05D000707 3.7e-07 58.5 109 37.6
Psat3g193960 Pisum sativum HOM05D000926 ORTHO05D000707 3.7e-07 58.5 104 42.3
MELO3C018927.2 Cucumis melo HOM05D000926 ORTHO05D000707 4.8e-07 58.2 91 44.0
Eucgr.J01438 Eucalyptus grandis HOM05D000926 ORTHO05D000707 4.8e-07 58.2 86 40.7
Glyma.18G277600 Glycine max HOM05D000926 ORTHO05D000707 4.8e-07 58.2 91 38.5
Rhsim08G0078900 Rhododendron simsii HOM05D000926 ORTHO05D000707 4.8e-07 58.2 87 41.4
Atru.chr9.649 Acer truncatum HOM05D000926 ORTHO05D000707 6.3e-07 57.8 92 37.0
Medtr7g018090 Medicago truncatula HOM05D000926 ORTHO05D000707 6.3e-07 57.8 91 40.7
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 6.3e-07 57.8 83 42.2
Cpa.g.sc70.7 Carica papaya HOM05D000926 ORTHO05D000707 8.3e-07 57.4 105 40.0
DCAR_002021 Daucus carota HOM05D000926 ORTHO05D000707 8.3e-07 57.4 108 38.9
HanXRQChr12g0380091 Helianthus annuus HOM05D000926 ORTHO05D000707 8.3e-07 57.4 88 33.0
Nitab4.5_0009468g0010 Nicotiana tabacum HOM05D000926 ORTHO05D000707 8.3e-07 57.4 93 39.8
Potri.017G107100 Populus trichocarpa HOM05D000926 ORTHO05D000707 8.3e-07 57.4 90 40.0
TWI34G1370 Tripterygium wilfordii HOM05D000926 ORTHO05D000707 8.3e-07 57.4 113 37.2
ClCG06G015310 Citrullus lanatus HOM05D000926 ORTHO05D000707 1.1e-06 57.0 81 37.0
Dinv33888 Davidia involucrata HOM05D000926 ORTHO05D000707 1.1e-06 57.0 100 38.0
Gohir.D07G185000 Gossypium hirsutum HOM05D000926 ORTHO05D000707 1.1e-06 57.0 95 35.8
Gorai.001G205500 Gossypium raimondii HOM05D000926 ORTHO05D000707 1.1e-06 57.0 95 35.8
HanXRQChr06g0179161 Helianthus annuus HOM05D000926 ORTHO05D000707 1.1e-06 57.0 96 38.5
MD17G1069200 Malus domestica HOM05D000926 ORTHO05D000707 1.1e-06 57.0 86 44.2
BcaC06g33728 Brassica carinata HOM05D015998 ORTHO05D000707 1.4e-06 56.6 99 39.4
A06p39650 Brassica napus HOM05D000926 ORTHO05D000707 1.4e-06 56.6 106 37.7
BraA06t26880Z Brassica rapa HOM05D000926 ORTHO05D000707 1.4e-06 56.6 106 37.7
Ciclev10013138m.g Citrus clementina HOM05D000926 ORTHO05D000707 1.4e-06 56.6 81 42.0
CsaV3_1G003190 Cucumis sativus L. HOM05D000926 ORTHO05D000707 1.4e-06 56.6 80 38.8
Eucgr.J01435 Eucalyptus grandis HOM05D000926 ORTHO05D000707 1.4e-06 56.6 87 42.5
Oeu049341.1 Olea europaea HOM05D000926 ORTHO05D000707 1.4e-06 56.6 89 40.4
Sabra04G0074000 Salix brachista HOM05D000926 ORTHO05D000707 1.4e-06 56.6 78 43.6
Gohir.D06G106200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 1.8e-06 56.2 83 41.0
Prupe.3G245300 Prunus persica HOM05D000926 ORTHO05D000707 1.8e-06 56.2 97 37.1
PGR042G1069 Punica granatum HOM05D000926 ORTHO05D000707 1.8e-06 56.2 76 42.1
arahy.Tifrunner.gnm1.ann1.0G1U1N Arachis hypogaea HOM05D000926 ORTHO05D000707 2.4e-06 55.8 100 39.0
CiPaw.03G077200 Carya illinoinensis HOM05D000926 ORTHO05D000707 2.4e-06 55.8 108 35.2
CiPaw.03G080300 Carya illinoinensis HOM05D000926 ORTHO05D000707 2.4e-06 55.8 115 41.7
Ciclev10009784m.g Citrus clementina HOM05D000926 ORTHO05D000707 2.4e-06 55.8 125 35.2
MD08G1049400 Malus domestica HOM05D000926 ORTHO05D000707 2.4e-06 55.8 109 37.6
Medtr1g013410 Medicago truncatula HOM05D000926 ORTHO05D000707 2.4e-06 55.8 106 36.8
Nn4g23604 Nelumbo nucifera HOM05D000926 ORTHO05D000707 2.4e-06 55.8 104 35.6
RcHm_v2.0_Chr2g0164161 Rosa chinensis HOM05D000926 ORTHO05D000707 2.4e-06 55.8 105 39.0
TPR.G3243 Trifolium pratense HOM05D000926 ORTHO05D000707 2.4e-06 55.8 98 38.8
Ah.16g100760 Amaranthus hybridus HOM05D000926 ORTHO05D000707 3.1e-06 55.5 111 36.9
Duzib084G1204 Durio zibethinus HOM05D000926 ORTHO05D000707 3.1e-06 55.5 91 41.8
Lsat_1_v5_gn_8_66681 Lactuca sativa HOM05D000926 ORTHO05D000707 3.1e-06 55.5 112 39.3
RcHm_v2.0_Chr2g0164151 Rosa chinensis HOM05D000926 ORTHO05D000707 3.1e-06 55.5 119 37.8
PGSC0003DMG400001477 Solanum tuberosum HOM05D000926 ORTHO05D000707 3.1e-06 55.5 100 35.0
THA.LOC109116337 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 3.1e-06 55.5 102 37.3
Aqoxy7G03167 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 4.1e-06 55.1 97 39.2
ECA236G4878 Erigeron canadensis HOM05D000926 ORTHO05D000707 4.1e-06 55.1 118 36.4
Gorai.010G120700 Gossypium raimondii HOM05D000926 ORTHO05D000707 4.1e-06 55.1 83 41.0
Nitab4.5_0013205g0010 Nicotiana tabacum HOM05D000926 ORTHO05D000707 4.1e-06 55.1 83 45.8
Prupe.3G245400 Prunus persica HOM05D000926 ORTHO05D000707 4.1e-06 55.1 110 41.8
Thecc.03G112300 Theobroma cacao HOM05D000926 ORTHO05D000707 4.1e-06 55.1 98 38.8
ECA236G2977 Erigeron canadensis HOM05D000926 ORTHO05D000707 5.4e-06 54.7 113 38.9
Gohir.A07G178200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.4e-06 54.7 96 37.5
HanXRQChr06g0179171 Helianthus annuus HOM05D000926 ORTHO05D000707 5.4e-06 54.7 117 36.8
PGR004G2735 Punica granatum HOM05D000926 ORTHO05D000707 5.4e-06 54.7 87 40.2
TPR.G3253 Trifolium pratense HOM05D000926 ORTHO05D000707 5.4e-06 54.7 119 32.8
MSTRG.2959 Avicennia marina HOM05D000926 ORTHO05D000707 7.0e-06 54.3 82 40.2
DCAR_010990 Daucus carota HOM05D000926 ORTHO05D000707 7.0e-06 54.3 98 39.8
Eucgr.J01437 Eucalyptus grandis HOM05D000926 ORTHO05D000707 7.0e-06 54.3 91 41.8
Nitab4.5_0001110g0150 Nicotiana tabacum HOM05D000926 ORTHO05D000707 7.0e-06 54.3 91 44.0
SalBow1G1369 Salvia bowleyana HOM05D000926 ORTHO05D000707 7.0e-06 54.3 95 36.8
TAR383G0697 Trochodendron aralioides HOM05D000926 ORTHO05D000707 7.0e-06 54.3 103 38.8
Manes.01G106100 Manihot esculenta HOM05D000926 ORTHO05D000707 9.1e-06 53.9 81 38.3
Potri.004G108800 Populus trichocarpa HOM05D000926 ORTHO05D000707 9.1e-06 53.9 107 37.4
Sed0020062 Sechium edule HOM05D000926 ORTHO05D000707 9.1e-06 53.9 78 43.6
SEGI_02174 Sequoiadendron giganteum HOM05D000926 ORTHO05D000707 9.1e-06 53.9 107 35.5


User provided reference genes

Program Settings