Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1264.6 653 100.0
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 8.1e-288 993.4 650 78.0
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 6.2e-280 967.2 646 76.2
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 3.4e-278 961.4 650 76.3
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 7.1e-276 953.7 650 74.0
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 3.9e-274 948.0 651 74.7
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 6.7e-274 947.2 653 74.1
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 2.5e-273 945.3 650 74.3
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 2.5e-273 945.3 650 73.7
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 3.3e-273 944.9 650 73.7
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 3.3e-273 944.9 654 72.8
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 3.7e-272 941.4 650 73.7
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 4.8e-272 941.0 657 74.6
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 2.4e-271 938.7 650 73.5
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 7.6e-270 933.7 650 73.2
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 4.9e-269 931.0 651 73.0
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 6.0e-267 924.1 650 72.2
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.3e-266 922.9 649 72.0
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 3.0e-266 921.8 650 73.4
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 6.7e-266 920.6 650 72.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 2.5e-265 918.7 650 72.8
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 9.0e-263 910.2 652 71.9
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 2.9e-261 905.2 650 71.2
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 2.9e-261 905.2 650 71.7
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 3.5e-259 898.3 650 71.5
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 3.0e-258 895.2 650 70.2
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 1.5e-257 892.9 643 70.8
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.5e-257 892.9 652 69.8
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 4.3e-257 891.3 643 70.6
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.6e-256 889.4 762 62.2
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.6e-256 889.4 643 70.5
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 8.2e-256 887.1 650 70.3
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.4e-255 885.6 643 70.1
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.1e-255 885.2 643 70.1
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 1.2e-254 883.2 652 69.9
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.5e-254 882.9 653 67.8
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 2.0e-254 882.5 650 71.1
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 2.6e-254 882.1 650 68.9
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 3.4e-254 881.7 657 70.0
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.0e-253 880.2 655 69.9
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 2.2e-253 879.0 655 69.9
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 3.8e-253 878.2 719 64.8
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 2.5e-252 875.5 656 69.4
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 9.4e-252 873.6 650 68.6
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 7.9e-251 870.5 662 68.7
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.8e-250 869.4 650 68.9
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 3.0e-250 868.6 650 66.9
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 3.3e-249 865.1 650 66.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 1.0e-245 853.6 653 68.0
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.4e-244 849.7 643 68.3
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 2.5e-244 849.0 650 67.2
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 1.8e-242 842.8 653 67.4
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 2.4e-239 832.4 654 67.6
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 7.0e-239 830.9 629 67.4
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 9.1e-239 830.5 650 66.0
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.9e-236 822.8 651 66.7
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 7.2e-236 820.8 646 66.6
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 2.7e-235 818.9 659 64.6
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 1.4e-234 816.6 655 67.0
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 2.6e-233 812.4 646 64.6
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 9.7e-233 810.4 655 65.5
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 4.1e-231 805.1 658 64.7
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 4.5e-230 801.6 550 74.2
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 2.7e-227 792.3 645 64.8
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.3e-225 785.4 650 61.7
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.0e-218 763.8 651 60.4
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 6.8e-218 761.1 651 59.6
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 1.5e-217 760.0 649 59.6
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 5.7e-217 758.1 653 61.7
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 9.8e-217 757.3 651 59.6
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 2.0e-214 749.6 651 58.4
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 3.5e-214 748.8 649 58.1
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.0e-213 747.3 649 58.1
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.0e-213 747.3 649 58.1
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.0e-213 747.3 649 58.1
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 5.5e-212 741.5 650 57.8
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 1.6e-211 740.0 650 57.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 6.1e-211 738.0 651 57.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 3.1e-207 725.7 585 65.6
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.7e-206 722.6 653 59.3
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.7e-205 719.9 653 59.0
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 4.9e-192 675.2 656 55.8
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 6.8e-186 654.8 675 54.1
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 9.9e-185 651.0 592 58.8
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 5.4e-175 618.6 462 68.6
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.7e-173 613.6 600 55.8
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 4.3e-164 582.4 435 70.3
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 9.0e-162 574.7 408 69.6
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 1.7e-160 570.5 598 53.8
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 1.4e-154 550.8 594 50.7
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.8e-146 523.9 600 48.2
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 9.0e-146 521.5 600 48.2
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 5.5e-127 459.1 435 57.2
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.1e-124 451.4 595 43.5
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.5e-120 435.6 479 51.6
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 3.2e-119 433.3 336 67.6
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 7.4e-116 422.2 357 62.2
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.5e-113 413.3 358 57.8
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.5e-113 413.3 358 57.8
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.0e-105 387.5 593 37.8
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.7e-105 387.1 323 65.9
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 4.2e-103 379.8 312 65.1
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 5.7e-100 369.4 228 83.8
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 9.1e-98 362.1 305 61.3
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 2.7e-97 360.5 295 63.4
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.0e-96 358.6 575 40.9
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 2.3e-96 357.5 270 67.8
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 1.7e-88 331.3 226 70.4
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 8.9e-85 318.9 321 55.1
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.7e-75 288.1 238 59.2
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.4e-69 268.5 206 63.6
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.2e-52 212.2 158 70.9
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.0e-52 211.5 153 72.5
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 3.1e-45 187.6 132 69.7
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 7.6e-44 183.0 148 56.1
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 5.3e-21 107.1 104 55.8
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 6.1e-17 93.6 305 29.2
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 6.5e-11 73.6 63 63.5
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 4.7e-09 67.4 52 53.8
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 4.8e-06 57.4 45 62.2


User provided reference genes

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