Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.1e-52 209.5 98 100.0
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.3e-43 177.2 92 87.0
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 6.9e-42 173.7 92 87.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 9.0e-42 173.3 92 84.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 9.0e-42 173.3 92 85.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.5e-41 171.0 92 85.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 4.5e-41 171.0 91 84.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.5e-41 171.0 93 86.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 7.7e-41 170.2 92 83.7
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.3e-40 169.5 92 81.5
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 2.2e-40 168.7 92 82.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 3.8e-40 167.9 91 83.5
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.8e-40 167.9 90 83.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 3.8e-40 167.9 92 83.7
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 5.0e-40 167.5 92 83.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 5.0e-40 167.5 92 82.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 6.5e-40 167.2 92 80.4
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 6.5e-40 167.2 91 83.5
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 1.1e-39 166.4 92 81.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 1.4e-39 166.0 92 83.7
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.4e-39 166.0 91 82.4
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.9e-39 165.6 92 81.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.9e-39 165.6 92 82.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 2.5e-39 165.2 92 81.5
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 2.5e-39 165.2 91 83.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-39 165.2 92 79.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.5e-39 165.2 91 82.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.2e-39 164.9 92 81.5
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.5e-39 164.1 90 82.2
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 7.2e-39 163.7 92 82.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 9.4e-39 163.3 92 80.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 9.4e-39 163.3 92 80.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 9.4e-39 163.3 92 78.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.2e-38 162.9 91 82.4
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 1.6e-38 162.5 92 79.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.6e-38 162.5 92 80.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.1e-38 162.2 87 82.8
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.1e-38 162.2 87 82.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 2.1e-38 162.2 90 81.1
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 2.1e-38 162.2 92 79.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 2.1e-38 162.2 90 80.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.1e-38 162.2 90 78.9
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-38 161.8 88 81.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-38 161.8 88 81.8
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.7e-38 161.8 92 77.2
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.7e-38 161.8 92 80.4
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.6e-38 161.4 88 79.5
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 3.6e-38 161.4 92 78.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 4.6e-38 161.0 92 80.4
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.6e-38 161.0 88 80.7
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 7.9e-38 160.2 92 79.3
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.0e-37 159.8 92 79.3
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.0e-37 159.8 92 80.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.0e-37 159.8 90 80.0
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.4e-37 159.5 91 76.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.4e-37 159.5 88 78.4
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.4e-37 159.5 92 78.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.4e-37 159.5 92 81.5
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.0e-37 158.3 91 75.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.0e-37 158.3 92 79.3
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.9e-37 157.9 92 79.3
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 3.9e-37 157.9 87 78.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 5.1e-37 157.5 89 79.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 6.7e-37 157.1 91 75.8
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 6.7e-37 157.1 92 77.2
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 6.7e-37 157.1 93 80.6
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.8e-37 156.8 92 76.1
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 8.8e-37 156.8 92 78.3
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 8.8e-37 156.8 92 78.3
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 8.8e-37 156.8 92 76.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.5e-36 156.0 89 78.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.0e-36 155.6 87 78.2
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.0e-36 155.6 89 77.5
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.3e-36 154.8 93 76.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 3.7e-35 151.4 93 74.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.3e-35 150.6 78 84.6
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-35 150.6 85 80.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-35 150.6 85 80.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-35 150.6 85 80.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 6.3e-35 150.6 91 74.7
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 8.2e-35 150.2 93 73.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.4e-34 149.4 88 77.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.4e-34 148.7 93 71.0
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.9e-34 147.1 93 68.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 9.1e-34 146.7 87 72.4
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.5e-33 146.0 93 69.9
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-33 145.2 77 83.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-33 145.2 77 83.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-33 145.2 77 83.1
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 5.9e-33 144.1 77 81.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.3e-32 142.9 80 77.5
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.3e-32 142.9 78 76.9
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.2e-32 142.1 80 78.8
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.9e-32 141.7 80 77.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 6.5e-32 140.6 90 72.2
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 6.5e-32 140.6 90 72.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.1e-31 139.8 90 72.2
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-31 139.4 80 76.2
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.4e-31 139.4 80 76.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.4e-31 139.4 80 76.2
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.9e-31 139.0 88 68.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 7.2e-31 137.1 80 75.0
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 7.2e-31 137.1 80 75.0
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.2e-30 136.3 88 73.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.2e-30 136.3 90 71.1
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-30 136.0 80 73.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.6e-30 136.0 80 73.8
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-30 135.6 80 75.0
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.1e-30 135.6 80 75.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-30 135.2 80 73.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-30 135.2 80 73.8
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.7e-30 135.2 86 70.9
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-29 132.9 76 76.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.4e-29 132.9 77 81.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.8e-29 132.5 87 71.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.7e-29 130.6 92 66.3
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 8.8e-29 130.2 74 79.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.3e-28 128.3 82 67.1
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.2e-27 125.6 89 66.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.7e-27 124.8 118 51.7
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.8e-27 124.4 82 63.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.2e-27 123.6 92 59.8
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.2e-27 123.6 92 59.8
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 8.2e-27 123.6 92 59.8
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-26 122.9 91 59.3
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 7.0e-26 120.6 187 39.6
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 9.1e-26 120.2 70 75.7
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.2e-25 119.8 95 60.0
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-24 114.8 89 59.6
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-24 114.8 89 59.6
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 6.1e-22 107.5 71 70.4
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.9e-15 85.9 59 66.1
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 6.8e-13 77.4 50 70.0
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.2e-12 76.6 49 69.4
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.0e-12 75.9 88 38.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-12 75.5 51 66.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 3.4e-12 75.1 49 67.3


User provided reference genes

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