Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1189.9 666 100.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.2e-249 866.7 631 71.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.1e-243 845.9 648 69.9
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 2.2e-240 835.9 665 67.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 3.5e-238 828.6 653 67.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 6.6e-237 824.3 666 66.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 2.1e-235 819.3 651 66.5
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 2.1e-235 819.3 659 65.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.4e-234 816.6 642 68.8
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.1e-234 815.5 652 65.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 4.5e-233 811.6 642 69.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 5.8e-233 811.2 650 66.5
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 9.9e-233 810.4 645 70.2
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.3e-232 810.1 651 65.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.8e-232 808.5 652 64.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.1e-231 807.0 656 67.2
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.4e-231 806.6 647 65.5
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.9e-231 806.2 644 65.8
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 7.1e-231 804.3 662 64.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 3.5e-230 802.0 641 66.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 1.0e-229 800.4 660 66.1
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.8e-229 799.7 636 66.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 3.9e-229 798.5 653 66.8
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 6.7e-229 797.7 664 64.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 1.5e-228 796.6 654 66.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.5e-228 796.6 677 65.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.9e-228 796.2 647 66.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 3.3e-228 795.4 640 65.5
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 9.6e-228 793.9 650 66.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 3.6e-227 792.0 670 63.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 9.0e-226 787.3 666 63.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 9.0e-226 787.3 653 64.5
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 3.4e-225 785.4 641 65.1
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 7.6e-225 784.3 641 64.7
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.3e-224 783.5 646 65.2
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.2e-224 782.7 650 66.0
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.9e-224 782.3 634 65.5
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 3.8e-224 781.9 657 65.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.8e-224 781.9 649 63.5
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 6.4e-224 781.2 649 64.3
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.4e-223 780.0 657 62.7
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.9e-223 779.6 648 65.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 2.4e-223 779.2 658 64.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.4e-223 779.2 654 63.9
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-222 776.5 643 67.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.6e-222 776.5 641 66.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.1e-222 776.2 637 65.5
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.6e-222 775.0 628 65.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 7.9e-222 774.2 650 63.1
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 7.9e-222 774.2 649 64.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.0e-221 773.9 668 62.3
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.0e-221 773.9 647 65.2
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 1.8e-221 773.1 641 63.3
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 8.7e-221 770.8 655 64.7
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.5e-220 769.2 640 65.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 5.6e-220 768.1 650 63.1
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 7.4e-220 767.7 660 64.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-219 766.9 651 61.4
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-219 766.5 640 64.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.6e-219 766.5 653 65.4
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 3.7e-219 765.4 640 64.5
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.1e-219 764.2 670 62.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 8.1e-219 764.2 648 64.5
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.4e-218 762.7 642 64.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.1e-218 762.3 665 65.6
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 6.9e-218 761.1 652 61.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 9.0e-218 760.8 658 65.8
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.2e-217 760.4 640 65.2
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.0e-217 759.6 669 62.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 2.6e-217 759.2 664 63.4
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 4.5e-217 758.4 642 62.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 7.6e-217 757.7 708 60.3
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.0e-216 757.3 670 61.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.4e-215 753.4 656 62.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.9e-215 753.1 637 62.2
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 2.5e-215 752.7 670 61.8
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 2.7e-214 749.2 649 63.2
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.5e-214 748.8 675 61.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 6.0e-214 748.0 674 61.4
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.1e-213 745.0 645 66.8
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-212 743.8 648 63.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 7.4e-212 741.1 654 64.2
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 9.6e-212 740.7 664 61.6
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 9.6e-212 740.7 664 61.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 9.6e-212 740.7 664 61.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-211 739.6 664 61.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.1e-211 739.6 664 61.1
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-210 736.9 667 61.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 6.9e-210 734.6 726 58.1
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.8e-208 728.8 642 63.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.5e-208 727.6 666 59.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 4.2e-207 725.3 666 62.0
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 4.8e-203 711.8 582 64.8
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.3e-202 708.4 641 59.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.2e-200 703.0 652 59.4
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.9e-199 699.9 478 74.3
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.5e-199 698.4 478 75.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.9e-198 694.5 478 74.7
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.4e-197 693.7 641 62.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 8.8e-197 691.0 644 59.8
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 4.1e-194 682.2 469 74.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.4e-191 673.7 663 59.7
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-190 669.8 676 57.5
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 6.1e-190 668.3 654 56.3
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 6.7e-189 664.8 676 56.8
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.0e-188 663.3 678 56.0
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.8e-184 649.0 676 56.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-183 647.5 636 58.0
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 5.5e-183 645.2 697 53.5
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.8e-179 632.1 663 54.6
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-173 614.4 664 55.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.8e-173 613.6 662 51.7
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-170 604.4 647 56.3
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.2e-157 558.9 587 56.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 9.5e-151 538.1 468 62.8
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 8.3e-147 525.0 505 57.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.5e-143 514.2 661 46.1
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.9e-131 472.6 705 42.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.9e-131 472.6 705 42.4
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 3.0e-128 463.4 687 40.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.8e-117 427.6 691 39.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.0e-112 411.8 484 48.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.1e-111 408.3 311 68.2
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.5e-111 407.1 403 55.6
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.8e-110 402.9 415 54.7
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.5e-108 396.4 689 39.2
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.4e-100 370.2 288 67.7
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-95 354.4 414 50.2
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.0e-83 315.5 213 77.5
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-60 238.4 340 48.5
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 4.7e-57 226.9 571 33.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.0e-56 224.2 267 52.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.9e-51 207.6 421 37.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 8.0e-49 199.5 477 34.8
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.1e-41 174.9 140 62.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.4e-39 167.5 229 48.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.7e-38 165.2 114 71.9
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.6e-23 114.8 316 28.8
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.2e-21 107.8 83 67.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.6e-20 104.0 108 51.9
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-19 102.4 113 42.5
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-17 95.9 85 56.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-16 92.8 82 56.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.8e-14 84.3 51 84.3
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 6.4e-14 83.6 114 47.4
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-13 82.0 59 72.9
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 4.6e-12 77.4 123 39.0
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.3e-11 75.9 61 62.3
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.0e-11 74.7 49 79.6
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.0e-11 74.7 49 79.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.0e-11 74.7 49 79.6
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 6.6e-11 73.6 49 77.6
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.8e-09 68.2 66 56.1
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 4.7e-09 67.4 54 66.7
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.4e-08 65.1 58 63.8
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-08 64.3 247 28.3
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 6.9e-08 63.5 55 60.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-07 62.4 51 66.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.4e-07 61.2 106 38.7
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 9.9e-07 59.7 48 64.6


User provided reference genes

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