Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.4e-200 701.4 354 100.0
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.4e-148 530.0 330 77.6
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 6.8e-148 527.7 330 77.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.0e-143 513.8 330 74.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.0e-143 512.3 330 74.8
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 7.3e-142 507.7 330 74.2
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.1e-141 506.1 330 74.5
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.4e-140 502.7 330 73.9
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.2e-138 496.1 330 73.3
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 4.9e-138 495.0 330 74.2
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.1e-137 493.8 331 73.7
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.1e-137 493.8 330 72.1
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.9e-137 493.0 330 72.7
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.2e-137 492.3 342 70.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.4e-137 491.5 330 71.8
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 2.7e-136 489.2 332 72.0
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.6e-136 488.4 331 73.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-135 485.0 331 72.2
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.1e-134 483.8 330 72.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.5e-134 483.4 338 69.2
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.5e-134 482.6 331 71.0
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 3.3e-134 482.3 330 70.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 4.3e-134 481.9 331 71.9
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 4.3e-134 481.9 330 70.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 9.6e-134 480.7 330 71.2
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.8e-133 479.2 330 72.4
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 2.8e-133 479.2 330 71.2
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.6e-133 478.8 331 72.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.4e-132 476.9 330 71.5
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.4e-132 476.9 330 71.2
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 4.0e-132 475.3 330 69.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.2e-131 473.8 330 68.5
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.2e-131 473.8 330 67.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 4.4e-131 471.9 330 69.1
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 5.8e-131 471.5 332 69.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 9.9e-131 470.7 330 70.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.1e-129 467.2 330 70.6
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.4e-129 466.8 330 70.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.9e-129 466.5 330 68.8
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.4e-129 466.1 330 67.0
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.2e-129 465.7 330 68.5
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 9.3e-129 464.2 330 70.6
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.2e-128 463.8 330 69.7
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.6e-128 463.4 333 69.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 2.1e-128 463.0 333 69.4
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 3.5e-128 462.2 333 69.4
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 3.5e-128 462.2 330 69.1
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 6.0e-128 461.5 331 68.0
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 1.3e-127 460.3 356 66.3
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.7e-127 459.9 330 69.1
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 3.0e-127 459.1 355 66.2
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.1e-126 457.2 331 68.0
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.9e-126 456.4 331 68.3
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 3.3e-126 455.7 331 67.4
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 3.3e-126 455.7 387 61.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 9.6e-126 454.1 333 67.9
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.3e-125 453.8 330 67.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.1e-125 453.0 345 64.3
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 2.8e-125 452.6 330 67.9
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.8e-125 452.6 331 67.4
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.4e-124 450.3 333 67.6
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.8e-124 449.9 330 67.9
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 3.1e-124 449.1 330 68.5
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 6.9e-124 448.0 331 67.4
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.5e-123 446.8 331 66.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.0e-123 446.4 330 67.6
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.0e-123 446.4 330 66.7
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 7.6e-123 444.5 333 67.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 9.9e-123 444.1 415 57.1
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.3e-122 443.7 326 65.0
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.9e-122 442.6 274 78.5
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.9e-121 439.9 330 66.1
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.4e-121 439.5 330 67.3
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.7e-120 436.0 331 64.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 2.3e-119 433.0 274 76.6
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.1e-118 430.6 330 63.0
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.9e-118 429.9 339 63.1
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.5e-118 429.5 330 65.8
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.3e-118 429.1 394 57.4
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 5.6e-118 428.3 283 71.4
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 1.3e-117 427.2 330 65.2
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.3e-117 427.2 332 64.5
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 1.6e-117 426.8 298 70.1
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.8e-117 426.0 332 65.1
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 6.9e-116 421.4 331 61.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 2.6e-115 419.5 331 61.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 7.1e-113 411.4 272 72.8
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 9.3e-113 411.0 442 50.7
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 1.3e-111 407.1 331 58.9
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 6.2e-109 398.3 330 63.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.7e-106 390.2 381 55.9
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 4.5e-91 339.0 337 54.0
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 5.9e-91 338.6 252 67.1
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 8.8e-87 324.7 336 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 9.7e-86 321.2 340 47.1
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.5e-81 306.6 220 67.7
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.5e-78 297.4 245 64.5
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.1e-76 291.2 339 46.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.9e-73 280.4 231 59.3
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 3.0e-71 273.1 199 70.4
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.6e-67 260.8 189 69.8
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 5.9e-67 258.8 346 39.6
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 8.0e-64 248.4 422 34.6
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 4.1e-60 236.1 171 70.2
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 9.5e-57 224.9 174 63.8
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 8.9e-55 218.4 259 44.8
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 5.6e-41 172.6 136 65.4
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.1e-32 144.1 416 25.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-31 141.4 104 64.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 9.9e-30 135.2 171 46.2
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 5.4e-28 129.4 82 75.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.7e-26 124.4 80 70.0
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 5.1e-26 122.9 79 68.4
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-24 118.2 111 52.3
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-19 100.9 125 47.2
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.0e-18 98.6 75 70.7
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 6.6e-18 95.9 71 63.4
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.5e-17 94.0 69 60.9
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 7.3e-17 92.4 60 70.0
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-14 84.0 63 69.8
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 7.6e-14 82.4 53 75.5
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 2.1e-08 64.3 56 55.4
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 3.1e-07 60.5 48 58.3
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-06 58.5 58 48.3
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.0e-06 57.8 34 76.5


User provided reference genes

Program Settings