Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.3e-194 682.9 360 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.9e-146 522.3 362 74.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.9e-144 514.2 362 76.2
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.5e-142 510.0 360 73.6
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.3e-142 508.8 358 73.5
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.3e-142 508.8 362 75.7
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 4.4e-142 508.4 362 75.7
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 5.7e-142 508.1 333 78.4
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 9.7e-142 507.3 332 76.5
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-141 506.9 358 72.1
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.8e-141 505.8 361 72.6
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.8e-141 505.8 331 78.5
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.2e-141 504.2 331 78.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.1e-140 503.8 362 72.4
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.1e-140 503.8 361 72.0
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 3.5e-139 498.8 362 69.9
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 4.5e-139 498.4 358 71.5
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.3e-138 496.9 364 69.5
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 6.5e-138 494.6 360 71.1
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 6.5e-138 494.6 361 69.8
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 6.5e-138 494.6 357 70.9
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.2e-137 492.3 330 75.5
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 4.2e-137 491.9 329 75.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 4.2e-137 491.9 330 75.2
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.5e-137 491.5 358 70.7
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 7.2e-137 491.1 362 69.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 7.2e-137 491.1 361 69.5
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 9.4e-137 490.7 362 69.3
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 9.4e-137 490.7 332 75.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.2e-136 490.3 330 75.5
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.6e-136 490.0 361 69.5
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 3.6e-136 488.8 330 74.2
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 4.7e-136 488.4 360 70.3
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.1e-136 488.0 358 69.8
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 8.0e-136 487.6 362 70.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 8.0e-136 487.6 362 69.6
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.0e-136 487.6 361 67.9
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 8.0e-136 487.6 362 69.9
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.0e-135 487.3 362 70.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.4e-135 486.9 362 68.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 5.2e-135 485.0 362 68.8
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 5.2e-135 485.0 362 68.8
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 5.2e-135 485.0 331 73.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 8.8e-135 484.2 362 69.1
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-134 483.8 361 69.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.1e-134 483.8 360 70.3
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.6e-134 482.6 360 70.6
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 3.3e-134 482.3 362 68.8
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 7.4e-134 481.1 333 74.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.3e-133 480.3 327 73.7
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.7e-133 478.8 361 68.4
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.8e-133 478.4 332 71.1
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 4.8e-133 478.4 351 70.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.4e-132 476.9 353 70.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.4e-132 476.9 357 68.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 4.1e-132 475.3 332 72.0
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.2e-131 473.8 359 67.1
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.2e-131 473.8 332 72.6
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.0e-131 473.0 363 67.2
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 4.5e-131 471.9 329 72.9
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.5e-131 471.9 337 71.2
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.0e-130 470.7 358 72.6
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.3e-130 470.3 332 72.9
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.2e-130 469.5 332 71.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.8e-130 468.8 330 72.1
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 6.5e-130 468.0 366 66.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 8.5e-130 467.6 362 69.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-129 467.2 346 69.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 8.0e-128 461.1 330 71.2
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 7.5e-126 454.5 435 59.3
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 3.1e-124 449.1 414 60.1
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 4.5e-123 445.3 364 68.7
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 5.9e-123 444.9 359 66.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-122 443.7 348 65.2
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.5e-121 440.3 282 78.7
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 2.5e-121 439.5 299 71.6
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 9.4e-121 437.6 330 67.3
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.7e-117 426.8 365 64.7
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 8.3e-117 424.5 361 62.3
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.4e-116 423.7 332 68.4
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 4.5e-115 418.7 335 65.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 7.7e-115 417.9 358 62.6
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.1e-113 414.1 317 68.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.6e-112 409.1 330 65.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.0e-111 406.0 264 76.1
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.5e-107 392.5 320 63.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 4.3e-105 385.6 264 74.6
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.1e-103 379.4 235 81.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.0e-103 379.0 336 58.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 6.8e-103 378.3 301 64.5
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.4e-102 375.9 325 60.0
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 5.8e-102 375.2 326 57.4
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 7.5e-102 374.8 265 73.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.3e-101 374.0 232 81.5
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 4.1e-100 369.0 271 71.2
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 9.2e-100 367.9 264 70.8
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.5e-99 365.9 284 64.8
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 4.6e-99 365.5 264 72.3
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 6.2e-96 355.1 234 76.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.0e-94 350.1 234 75.2
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.9e-93 346.3 234 75.6
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 3.2e-92 342.8 351 51.6
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 8.9e-87 324.7 207 80.2
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.5e-81 307.4 314 54.1
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.7e-77 293.9 336 47.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.6e-75 287.3 201 73.1
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 4.2e-68 262.7 338 44.1
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.4e-63 246.9 182 65.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 4.0e-55 219.5 432 35.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.0e-50 204.9 219 53.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.3e-50 203.8 222 50.5
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.7e-50 202.2 214 51.4
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.5e-46 191.0 147 68.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-38 164.9 109 74.3
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-36 156.8 151 55.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.0e-34 151.8 310 30.6
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.8e-32 143.7 146 55.5
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.9e-28 131.0 136 52.9
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.2e-28 130.2 118 55.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.6e-25 120.6 108 59.3
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 4.8e-24 116.3 307 31.3
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.8e-24 116.3 96 61.5
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.4e-23 114.8 75 74.7
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.1e-23 113.6 81 69.1
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-22 111.3 73 74.0
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.2e-20 103.6 77 68.8
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.7e-17 92.0 64 73.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.7e-08 64.7 124 32.3
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 5.4e-07 59.7 118 33.9
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 9.1e-07 58.9 178 27.0
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 9.1e-07 58.9 118 32.2
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 1.2e-06 58.5 123 33.3
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 1.6e-06 58.2 86 37.2
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.6e-06 58.2 108 31.5
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.6e-06 58.2 122 31.1
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 2.0e-06 57.8 104 32.7
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 2.0e-06 57.8 104 32.7
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 2.7e-06 57.4 117 31.6
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 2.7e-06 57.4 117 30.8
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 2.7e-06 57.4 108 31.5
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 2.7e-06 57.4 88 36.4
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 3.5e-06 57.0 104 32.7
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 3.5e-06 57.0 75 37.3
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 3.5e-06 57.0 117 31.6
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 4.5e-06 56.6 100 36.0
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 4.5e-06 56.6 105 31.4
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 4.5e-06 56.6 88 35.2
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 4.5e-06 56.6 118 31.4
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 4.5e-06 56.6 108 34.3
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 4.5e-06 56.6 122 31.1
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 5.9e-06 56.2 96 32.3
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 5.9e-06 56.2 104 30.8
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 5.9e-06 56.2 117 30.8
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 5.9e-06 56.2 90 32.2
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 5.9e-06 56.2 127 28.3
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 5.9e-06 56.2 117 30.8
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 7.7e-06 55.8 88 34.1
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 7.7e-06 55.8 29 86.2
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 7.7e-06 55.8 88 35.2
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 7.7e-06 55.8 117 31.6
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 7.7e-06 55.8 88 34.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.7e-06 55.8 142 26.8


User provided reference genes

Program Settings