Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 4.0e-98 361.7 217 100.0
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.9e-32 142.1 197 50.8
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.2e-31 139.0 196 49.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.1e-31 138.3 193 50.3
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 7.9e-30 134.8 230 43.5
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.9e-30 134.8 193 49.7
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.0e-29 134.4 239 46.4
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.3e-29 133.3 194 49.5
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 3.0e-29 132.9 194 49.5
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 5.1e-29 132.1 196 48.0
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 6.7e-29 131.7 226 44.7
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.9e-28 130.2 197 47.2
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.5e-28 129.8 192 50.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.3e-28 129.4 196 49.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.3e-28 129.0 194 46.4
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.4e-28 128.3 244 41.8
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 9.6e-28 127.9 193 48.2
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 9.6e-28 127.9 226 45.6
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.3e-27 127.5 193 47.2
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.6e-27 127.1 232 42.2
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.8e-27 126.3 196 48.0
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 6.3e-27 125.2 182 48.9
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.4e-26 124.0 220 45.9
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.8e-26 123.6 227 43.6
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 5.3e-26 122.1 220 45.9
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 6.9e-26 121.7 194 46.4
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.9e-26 121.7 185 44.9
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.9e-26 121.7 194 46.4
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.2e-25 120.9 210 47.6
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.6e-25 119.8 189 45.5
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.6e-25 119.8 191 50.3
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 4.5e-25 119.0 194 45.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 5.9e-25 118.6 196 45.9
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.6e-25 118.2 282 36.5
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 7.6e-25 118.2 159 51.6
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.3e-24 117.5 197 46.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.7e-24 117.1 195 45.6
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.2e-24 116.7 192 41.1
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 2.9e-24 116.3 177 47.5
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.5e-24 114.8 154 51.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 8.5e-24 114.8 158 48.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 8.5e-24 114.8 149 49.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-23 114.0 190 48.9
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.4e-23 114.0 157 54.1
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.4e-23 114.0 150 56.0
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.4e-23 114.0 189 45.0
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-23 113.6 185 43.2
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 2.5e-23 113.2 198 46.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.2e-23 112.5 283 36.0
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 4.2e-23 112.5 178 47.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.2e-23 112.5 175 49.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 7.2e-23 111.7 193 44.6
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 9.3e-23 111.3 201 42.3
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.2e-22 110.9 190 43.2
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-22 110.2 183 44.3
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.7e-22 109.8 244 39.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 2.7e-22 109.8 191 43.5
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.6e-22 109.4 148 49.3
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 4.6e-22 109.0 191 45.0
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 7.9e-22 108.2 153 51.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.3e-21 107.5 152 50.0
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.3e-21 107.5 142 52.1
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.3e-21 107.5 197 42.6
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.9e-21 105.9 196 44.9
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 6.7e-21 105.1 179 46.9
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 6.7e-21 105.1 189 46.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 8.7e-21 104.8 187 42.2
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 5.7e-20 102.1 182 44.5
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.7e-20 101.3 169 50.9
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 9.7e-20 101.3 197 43.1
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.2e-19 100.1 187 41.2
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.7e-19 99.4 157 51.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 3.7e-19 99.4 165 44.8
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.8e-19 99.0 187 42.8
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-18 97.8 188 43.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.4e-18 97.4 274 39.8
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.1e-18 95.9 197 44.2
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 6.9e-18 95.1 256 42.2
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.9e-18 95.1 208 41.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.2e-17 94.4 217 41.0
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.5e-17 94.0 146 50.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 7.7e-17 91.7 205 40.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 7.7e-17 91.7 205 40.5
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 7.7e-17 91.7 205 40.5
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-16 90.5 187 39.6
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.8e-16 89.4 179 43.0
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.8e-16 89.4 204 41.2
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.5e-16 88.6 257 34.2
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.1e-15 87.8 272 39.0
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.4e-15 87.4 130 47.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.9e-15 87.0 165 41.8
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.5e-15 86.7 157 41.4
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.2e-15 86.3 117 51.3
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.5e-15 85.5 247 40.1
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 6.1e-14 82.0 234 33.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 7.9e-14 81.6 255 40.8
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 7.9e-14 81.6 203 36.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 7.9e-14 81.6 223 37.2
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.8e-13 80.5 111 45.0
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.3e-13 80.1 154 37.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.9e-13 79.3 217 35.5
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 3.9e-13 79.3 233 34.8
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 3.9e-13 79.3 253 34.0
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.9e-13 79.3 178 37.6
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.1e-13 79.0 157 40.1
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 5.1e-13 79.0 253 34.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 5.1e-13 79.0 253 34.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.1e-13 79.0 173 38.7
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 6.7e-13 78.6 258 32.6
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 8.8e-13 78.2 198 36.9
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 8.8e-13 78.2 152 43.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.5e-12 77.4 159 41.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.6e-12 76.6 148 41.9
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 4.4e-12 75.9 199 35.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 4.4e-12 75.9 151 39.7
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.4e-12 75.9 255 32.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.7e-12 75.5 221 33.9
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 9.7e-12 74.7 141 39.0
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.3e-11 74.3 183 35.5
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.3e-11 74.3 191 35.6
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 2.2e-11 73.6 210 35.2
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 2.8e-11 73.2 153 40.5
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 3.7e-11 72.8 152 36.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 6.3e-11 72.0 213 32.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.4e-10 70.1 246 36.6
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.4e-10 70.1 140 42.9
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 5.3e-10 68.9 245 37.1
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 5.3e-10 68.9 151 35.1
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.9e-10 68.6 192 31.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 9.1e-10 68.2 216 34.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.6e-09 66.6 188 43.6
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 2.6e-09 66.6 101 46.5
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.4e-09 66.2 123 42.3
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 4.5e-09 65.9 222 32.9
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 5.9e-09 65.5 184 36.4
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.3e-08 64.3 84 56.0
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.7e-08 63.9 204 31.4
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 2.9e-08 63.2 246 35.0
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.8e-08 62.8 225 31.1
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.2e-07 59.3 96 49.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.2e-07 59.3 96 49.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 9.4e-07 58.2 251 34.7
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.6e-06 57.4 212 33.0
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.7e-06 56.6 90 46.7


User provided reference genes

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