Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 5.7e-181 637.5 331 100.0
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 1.6e-103 380.2 260 73.1
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 2.0e-101 373.2 260 70.0
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.0e-101 373.2 260 70.0
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 1.0e-100 370.9 260 72.7
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 1.0e-100 370.9 260 70.4
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 1.3e-100 370.5 260 71.2
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 2.2e-100 369.8 282 68.4
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.2e-100 369.8 260 69.6
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 8.4e-100 367.9 260 70.0
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 4.2e-99 365.5 260 70.4
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 2.1e-98 363.2 260 68.8
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 3.5e-98 362.5 260 68.5
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 3.5e-98 362.5 260 69.2
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 3.5e-98 362.5 263 73.0
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 6.1e-98 361.7 260 70.4
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.3e-97 360.5 260 70.0
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 3.9e-97 359.0 260 70.8
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.5e-96 357.1 260 68.8
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 1.5e-96 357.1 260 68.8
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 2.5e-96 356.3 280 67.1
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 3.3e-96 355.9 260 69.6
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 7.4e-96 354.8 260 68.5
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 9.7e-96 354.4 262 68.3
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 4.8e-95 352.1 262 67.6
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 6.3e-95 351.7 260 68.8
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 3.1e-94 349.4 260 70.0
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 4.1e-94 349.0 260 68.8
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 5.3e-94 348.6 261 69.3
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 2.0e-93 346.7 260 66.5
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 2.6e-93 346.3 267 70.0
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 7.7e-93 344.7 262 66.8
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 1.0e-92 344.4 260 68.8
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.7e-92 343.6 260 66.5
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 8.5e-92 341.3 260 65.8
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 1.9e-91 340.1 261 66.3
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 9.4e-91 337.8 260 65.4
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 6.1e-90 335.1 260 68.1
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 1.0e-89 334.3 260 65.4
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 1.0e-89 334.3 260 68.1
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 1.0e-89 334.3 260 64.6
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 3.9e-89 332.4 258 64.3
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 8.8e-89 331.3 279 63.4
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.1e-88 330.9 311 56.9
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.1e-88 330.9 258 64.0
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 1.5e-88 330.5 252 67.1
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 1.5e-88 330.5 263 65.0
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 2.5e-88 329.7 261 64.0
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 3.3e-88 329.3 252 67.1
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 5.7e-88 328.6 251 65.7
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 1.7e-87 327.0 260 65.0
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 2.8e-87 326.2 259 64.5
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 2.8e-87 326.2 224 71.4
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 4.8e-87 325.5 226 73.5
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 1.4e-86 323.9 348 54.3
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 2.4e-86 323.2 263 64.3
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 3.1e-86 322.8 271 63.1
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 5.3e-86 322.0 261 63.2
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 3.8e-84 315.8 260 61.9
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 5.0e-84 315.5 259 62.2
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 8.5e-84 314.7 260 61.9
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 3.2e-83 312.8 260 61.9
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 3.2e-83 312.8 260 61.9
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 9.4e-83 311.2 260 61.5
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 4.7e-82 308.9 260 60.0
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 7.9e-82 308.1 324 52.5
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.0e-81 307.8 308 57.8
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.0e-81 307.8 260 60.0
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 2.6e-80 303.1 228 68.0
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 1.2e-77 294.3 262 58.0
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 1.6e-77 293.9 271 59.4
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 5.9e-77 292.0 260 60.4
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 7.7e-77 291.6 224 67.4
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 4.2e-75 285.8 262 59.2
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 7.2e-75 285.0 224 66.1
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.4e-73 280.8 258 58.9
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 1.1e-72 277.7 226 65.0
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 3.3e-72 276.2 179 75.4
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 1.4e-70 270.8 175 76.6
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 4.1e-70 269.2 260 56.5
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 7.0e-70 268.5 175 74.9
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 5.5e-67 258.8 260 55.0
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 3.6e-66 256.1 246 57.7
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 6.1e-66 255.4 194 68.6
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 1.4e-65 254.2 175 74.9
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 1.4e-62 244.2 282 50.4
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 5.9e-61 238.8 223 60.5
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 7.7e-61 238.4 223 60.1
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 1.3e-60 237.7 269 48.7
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 7.2e-59 231.9 221 57.5
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.2e-58 231.1 332 44.3
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 6.1e-58 228.8 268 45.1
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 6.8e-57 225.3 179 67.6
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 3.4e-56 223.0 330 42.1
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 2.8e-55 219.9 172 65.7
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 1.3e-52 211.1 301 44.9
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 8.6e-52 208.4 185 60.0
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 9.2e-46 188.3 265 45.7
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 4.6e-37 159.5 212 47.2
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.7e-36 157.5 225 40.4
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 3.1e-25 120.2 82 74.4
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.3e-23 114.8 79 70.9
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 2.3e-20 104.0 223 32.3
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 6.6e-20 102.4 263 29.7
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 1.5e-19 101.3 69 71.0
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 3.3e-19 100.1 68 75.0
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 3.3e-19 100.1 113 48.7
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 3.3e-19 100.1 68 67.6
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 2.8e-18 97.1 68 70.6
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.8e-17 94.4 55 78.2
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 3.3e-11 73.6 141 32.6
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 3.1e-09 67.0 223 27.8
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 3.4e-08 63.5 302 24.5
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 1.3e-07 61.6 42 66.7
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.7e-07 61.2 57 57.9
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 2.9e-07 60.5 47 59.6
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 4.9e-07 59.7 43 62.8
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 4.9e-07 59.7 141 28.4
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 6.4e-07 59.3 225 25.3
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 1.4e-06 58.2 224 25.4
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 1.4e-06 58.2 249 26.5
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 2.4e-06 57.4 220 26.4
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 4.2e-06 56.6 296 24.7
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 5.4e-06 56.2 226 25.7
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 9.3e-06 55.5 217 24.4


User provided reference genes

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