Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.1e-87 326.6 165 100.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 8.4e-32 141.0 141 57.4
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 8.4e-32 141.0 123 64.2
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.7e-29 133.3 142 54.2
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.8e-27 125.9 141 48.9
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.1e-27 124.4 177 48.0
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.1e-26 122.5 177 47.5
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.1e-26 122.5 125 56.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 4.0e-26 122.1 182 48.9
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 5.3e-26 121.7 169 47.9
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 5.3e-26 121.7 169 48.5
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.9e-26 121.3 180 48.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.2e-25 120.6 186 46.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.0e-25 119.8 185 47.6
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.6e-25 119.4 144 52.8
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.4e-25 119.0 180 48.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.5e-25 118.6 181 46.4
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 4.5e-25 118.6 144 53.5
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.8e-25 118.2 169 47.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 7.6e-25 117.9 182 46.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 9.9e-25 117.5 144 52.8
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.3e-24 117.1 178 45.5
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.3e-24 117.1 169 47.3
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.2e-24 116.3 146 51.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.2e-24 116.3 181 47.5
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-24 115.9 150 50.7
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.9e-24 115.9 150 50.7
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.9e-24 115.9 174 44.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.9e-24 115.9 144 51.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.8e-24 115.5 176 45.5
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.8e-24 115.5 178 46.1
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.8e-24 115.5 144 52.8
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.8e-24 115.5 186 43.0
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 3.8e-24 115.5 185 42.7
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.8e-24 115.5 125 49.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.8e-24 115.5 172 45.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.8e-24 115.5 153 51.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 3.8e-24 115.5 152 51.3
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.8e-24 115.5 152 51.3
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 4.9e-24 115.2 178 46.1
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.4e-24 114.8 179 44.7
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.4e-24 114.8 155 47.7
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 8.4e-24 114.4 134 53.7
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 8.4e-24 114.4 169 47.3
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.1e-23 114.0 183 45.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.1e-23 114.0 121 57.9
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.4e-23 113.6 188 44.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.4e-23 113.6 165 47.3
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.4e-23 113.6 184 44.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.4e-23 113.6 144 51.4
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.9e-23 113.2 183 45.4
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.9e-23 113.2 173 43.9
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.9e-23 113.2 140 50.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.4e-23 112.8 166 46.4
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.4e-23 112.8 170 49.4
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.4e-23 112.8 177 44.6
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 4.2e-23 112.1 174 44.8
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.4e-23 111.7 176 41.5
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.4e-23 111.7 120 54.2
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 7.1e-23 111.3 180 45.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 7.1e-23 111.3 126 50.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.1e-23 111.3 182 44.5
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.1e-23 111.3 182 44.5
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 7.1e-23 111.3 182 44.5
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 7.1e-23 111.3 145 49.7
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 9.3e-23 110.9 183 44.8
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.3e-23 110.9 144 50.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 9.3e-23 110.9 127 52.0
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 9.3e-23 110.9 171 42.7
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 9.3e-23 110.9 179 45.3
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 9.3e-23 110.9 159 45.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 9.3e-23 110.9 155 46.5
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.2e-22 110.5 150 48.7
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.2e-22 110.5 151 49.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.2e-22 110.5 174 47.1
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.2e-22 110.5 170 44.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.1e-22 109.8 104 59.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.7e-22 109.4 145 49.0
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 2.7e-22 109.4 115 54.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.5e-22 109.0 145 51.7
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.5e-22 109.0 159 45.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.5e-22 109.0 128 53.1
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 3.5e-22 109.0 184 42.9
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 3.5e-22 109.0 155 43.9
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 6.0e-22 108.2 154 46.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 6.0e-22 108.2 150 46.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.0e-21 107.5 159 44.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.3e-21 107.1 160 45.6
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.3e-21 107.1 127 51.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.0e-21 105.9 176 42.0
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 3.0e-21 105.9 146 47.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 3.9e-21 105.5 125 52.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 5.1e-21 105.1 136 47.1
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.1e-21 105.1 125 48.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 8.7e-21 104.4 136 48.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.1e-20 104.0 162 43.2
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-20 104.0 127 49.6
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.5e-20 103.6 147 49.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.5e-20 103.6 132 49.2
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.9e-20 103.2 172 44.2
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.5e-20 102.8 174 42.5
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 4.3e-20 102.1 142 49.3
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 4.3e-20 102.1 136 46.3
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.3e-20 102.1 143 44.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.6e-20 101.7 179 43.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.6e-20 101.7 179 43.6
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 9.6e-20 100.9 159 44.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.6e-19 100.1 143 44.1
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.8e-19 99.4 129 47.3
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.6e-19 99.0 122 52.5
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.4e-18 97.1 126 47.6
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.3e-18 95.1 172 41.3
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 6.9e-18 94.7 138 47.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.2e-17 94.0 144 44.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.2e-17 94.0 197 38.1
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 5.8e-17 91.7 147 42.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 5.8e-17 91.7 148 42.6
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.6e-17 91.3 104 50.0
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 9.9e-17 90.9 117 50.4
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 9.9e-17 90.9 117 50.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.7e-16 90.1 118 50.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.2e-16 89.7 147 44.9
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.2e-16 89.7 120 50.8
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-16 89.7 116 49.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-16 89.7 116 49.1
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.2e-16 89.7 116 49.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.2e-16 89.7 116 49.1
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-16 89.4 118 50.0
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.9e-16 89.4 178 39.3
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.8e-16 89.0 116 51.7
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.8e-16 89.0 117 49.6
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-16 88.6 152 40.8
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.9e-16 88.6 150 44.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.9e-16 88.6 119 49.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 6.4e-16 88.2 151 42.4
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 6.4e-16 88.2 151 42.4
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 8.4e-16 87.8 152 42.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 8.4e-16 87.8 139 43.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.4e-15 87.0 115 48.7
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.4e-15 87.0 75 58.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-15 86.7 135 43.0
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-15 86.7 151 41.1
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.4e-15 86.3 190 41.1
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 4.2e-15 85.5 115 48.7
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 5.5e-15 85.1 116 48.3
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.2e-14 84.0 110 49.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 7.9e-14 81.3 81 58.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-13 80.1 162 41.4
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.3e-13 79.7 128 46.1
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.3e-13 79.7 116 46.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.9e-13 79.0 172 36.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.5e-12 76.3 129 45.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 5.6e-12 75.1 55 63.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-12 74.3 128 44.5
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 6.2e-11 71.6 61 57.4
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 8.1e-11 71.2 133 43.6
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.1e-10 69.3 131 38.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.0e-10 68.9 171 31.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.5e-09 65.5 130 36.2


User provided reference genes

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