Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 2.0e-80 302.4 155 100.0
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 2.5e-30 136.0 158 51.3
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 1.8e-28 129.8 158 46.2
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 3.1e-28 129.0 160 48.1
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 4.0e-28 128.6 143 47.6
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 7.6e-27 124.4 128 46.9
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 7.6e-27 124.4 148 47.3
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 7.6e-27 124.4 150 51.3
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 7.6e-27 124.4 149 49.7
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 1.7e-26 123.2 148 46.6
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 2.9e-26 122.5 141 50.4
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 6.5e-26 121.3 148 48.6
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 1.4e-25 120.2 150 45.3
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 3.2e-25 119.0 148 46.6
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 5.5e-25 118.2 150 46.7
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 5.5e-25 118.2 143 44.8
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 9.3e-25 117.5 159 46.5
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 9.3e-25 117.5 139 47.5
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 1.6e-24 116.7 142 47.2
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 1.6e-24 116.7 151 48.3
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 2.1e-24 116.3 143 44.1
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 2.1e-24 116.3 148 45.9
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 2.1e-24 116.3 141 45.4
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 4.6e-24 115.2 149 47.0
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 7.9e-24 114.4 142 50.7
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 1.0e-23 114.0 142 45.8
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 1.3e-23 113.6 142 45.8
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 5.1e-23 111.7 141 44.0
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.1e-22 110.5 158 41.8
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 1.1e-22 110.5 142 46.5
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 1.5e-22 110.2 143 46.9
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 1.5e-22 110.2 136 49.3
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 1.5e-22 110.2 157 42.7
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.9e-22 109.8 141 44.7
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 2.5e-22 109.4 142 44.4
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 3.3e-22 109.0 141 43.3
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 5.7e-22 108.2 149 39.6
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 5.7e-22 108.2 132 46.2
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 1.3e-21 107.1 142 45.8
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 1.3e-21 107.1 143 45.5
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 1.6e-21 106.7 143 43.4
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 1.6e-21 106.7 142 45.8
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 2.1e-21 106.3 161 42.9
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 2.1e-21 106.3 132 46.2
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 2.8e-21 105.9 142 46.5
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 2.8e-21 105.9 142 43.0
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 3.7e-21 105.5 138 45.7
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 6.2e-21 104.8 142 43.0
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 2.4e-20 102.8 135 45.9
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.4e-20 102.8 140 43.6
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.4e-20 102.8 157 41.4
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 5.3e-20 101.7 140 45.7
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 9.0e-20 100.9 135 43.0
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 9.0e-20 100.9 139 42.4
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.2e-19 100.5 129 43.4
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 1.2e-19 100.5 134 43.3
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 1.5e-19 100.1 158 41.8
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 2.0e-19 99.8 133 44.4
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 2.0e-19 99.8 135 45.2
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 2.6e-19 99.4 135 45.2
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 3.4e-19 99.0 93 52.7
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 3.4e-19 99.0 142 44.4
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 7.6e-19 97.8 160 40.6
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 1.0e-18 97.4 133 43.6
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 2.9e-18 95.9 143 43.4
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 5.0e-18 95.1 135 43.7
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 1.9e-17 93.2 169 39.1
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 2.5e-17 92.8 179 35.8
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 3.2e-17 92.4 143 42.0
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 4.2e-17 92.0 160 36.9
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 1.6e-16 90.1 150 40.7
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 2.1e-16 89.7 136 41.2
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 3.5e-16 89.0 150 40.7
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 6.1e-16 88.2 98 42.9
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 5.1e-15 85.1 129 37.2
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 6.7e-15 84.7 170 35.9
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 6.7e-15 84.7 148 38.5
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 1.3e-13 80.5 93 47.3
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 5.3e-12 75.1 111 41.4
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 9.0e-12 74.3 113 40.7
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 8.5e-10 67.8 159 32.7
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 7.2e-09 64.7 77 44.2
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 1.2e-08 63.9 119 35.3
Actinidia15867 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.0e-07 60.8 70 50.0
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.8e-07 60.1 69 52.2
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 1.1e-06 57.4 78 44.9
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 4.3e-06 55.5 63 54.0
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 5.7e-06 55.1 102 37.3


User provided reference genes

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