Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 5.9e-167 590.9 316 100.0
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 5.4e-72 275.4 315 54.9
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 1.6e-71 273.9 291 55.0
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 2.1e-71 273.5 312 52.6
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 2.7e-71 273.1 292 54.8
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 1.4e-59 234.2 267 51.7
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 2.0e-58 230.3 279 49.1
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 2.9e-57 226.5 306 45.4
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 1.4e-56 224.2 264 52.3
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 3.5e-55 219.5 314 44.3
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 3.9e-54 216.1 282 44.0
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 1.1e-53 214.5 287 46.7
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.3e-52 211.1 287 47.4
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 1.3e-52 211.1 281 47.7
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 4.8e-52 209.1 329 43.8
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 6.3e-52 208.8 254 50.4
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 1.0e-49 201.4 241 50.6
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 2.9e-49 199.9 242 49.2
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 2.5e-48 196.8 287 43.9
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 1.6e-47 194.1 294 42.5
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 4.6e-47 192.6 328 40.5
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 1.4e-46 191.0 241 47.3
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 2.3e-46 190.3 271 45.8
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 3.9e-46 189.5 276 42.0
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 6.7e-46 188.7 278 42.4
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 6.7e-46 188.7 233 48.5
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 8.8e-46 188.3 244 44.3
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 2.0e-45 187.2 282 43.3
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 4.3e-45 186.0 282 45.4
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 1.7e-44 184.1 262 45.0
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 2.8e-44 183.3 265 43.0
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 2.8e-44 183.3 322 41.3
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 4.8e-44 182.6 236 45.3
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 4.8e-44 182.6 259 42.1
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 8.2e-44 181.8 236 44.9
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 2.4e-43 180.3 260 44.6
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 3.1e-43 179.9 264 43.2
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 4.1e-43 179.5 254 46.1
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 5.3e-43 179.1 262 46.6
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 6.9e-43 178.7 271 45.0
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 2.0e-42 177.2 247 44.5
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 2.6e-42 176.8 265 44.2
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.3e-41 174.5 312 41.0
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 1.7e-41 174.1 247 44.9
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 5.0e-41 172.6 297 42.8
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 6.5e-41 172.2 238 44.5
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 8.5e-41 171.8 253 43.9
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 5.5e-40 169.1 258 41.9
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 7.2e-40 168.7 285 39.6
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 6.1e-39 165.6 168 55.4
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 1.4e-38 164.5 242 44.6
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.3e-38 163.7 290 41.4
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 6.7e-38 162.2 291 40.5
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 1.1e-37 161.4 298 38.3
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 3.3e-37 159.8 291 41.9
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 7.4e-37 158.7 298 37.9
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 1.7e-36 157.5 274 38.7
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 2.2e-36 157.1 325 39.1
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 2.2e-36 157.1 276 41.7
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 3.7e-36 156.4 252 48.0
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 3.7e-36 156.4 283 38.5
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 3.1e-35 153.3 252 42.9
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 4.1e-35 152.9 307 38.1
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 7.0e-35 152.1 277 41.9
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 7.0e-35 152.1 244 43.4
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 4.5e-34 149.4 270 39.6
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 1.0e-33 148.3 218 43.6
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 1.0e-33 148.3 258 42.2
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 1.3e-33 147.9 277 40.1
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 1.3e-33 147.9 329 38.0
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 1.7e-33 147.5 273 41.0
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 5.0e-33 146.0 331 39.0
AL3G11840 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 1.2e-31 141.4 181 47.0
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 1.4e-27 127.9 260 37.3
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 8.5e-25 118.6 273 33.0
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 3.2e-24 116.7 260 35.0
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 7.2e-24 115.5 148 40.5
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 4.7e-23 112.8 239 33.1
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 1.4e-22 111.3 289 31.8
AUR62035477 Chenopodium quinoa HOM05D000128 ORTHO05D000059 1.8e-19 100.9 85 56.5
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 3.1e-19 100.1 149 44.3
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 1.5e-16 91.3 177 40.1
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 9.8e-13 78.6 78 55.1
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 8.3e-12 75.5 80 52.5
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 1.1e-11 75.1 76 52.6
SMO145G0090 Selaginella moellendorffii HOM05D007356 ORTHO05D009247 1.8e-11 74.3 197 29.9
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 2.4e-11 73.9 219 26.5
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 6.6e-09 65.9 221 30.3
AUR62025817 Chenopodium quinoa HOM05D036334 ORTHO05D009247 1.9e-08 64.3 70 47.1
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 9.5e-08 62.0 96 42.7
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 2.8e-07 60.5 44 65.9
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 4.7e-07 59.7 76 48.7
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 8.0e-07 58.9 177 27.1
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 4.0e-06 56.6 323 28.5


User provided reference genes

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