Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 0.0e+00 1209.9 691 100.0
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.5e-186 656.4 500 65.2
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 2.2e-182 643.3 500 63.4
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 6.3e-182 641.7 502 63.9
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 8.3e-182 641.3 498 64.3
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 7.7e-180 634.8 502 63.9
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 1.3e-179 634.0 497 62.8
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 6.5e-179 631.7 501 63.3
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 1.5e-178 630.6 502 62.7
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 9.5e-178 627.9 497 62.4
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 9.5e-178 627.9 486 63.8
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 5.4e-173 612.1 501 60.7
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 9.2e-173 611.3 499 61.1
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 1.5e-170 604.0 501 60.5
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.8e-169 599.7 518 60.8
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 4.7e-169 599.0 502 60.4
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 2.0e-167 593.6 527 57.1
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 1.7e-166 590.5 500 58.0
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 1.7e-166 590.5 501 57.7
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.4e-165 586.6 530 57.0
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 4.1e-165 585.9 500 57.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 5.4e-165 585.5 493 60.2
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 7.0e-165 585.1 504 59.5
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 8.6e-163 578.2 496 59.1
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.1e-162 577.8 500 57.2
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 2.5e-162 576.6 500 56.8
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 5.6e-162 575.5 493 59.8
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 5.6e-162 575.5 496 59.3
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 2.1e-161 573.5 496 58.1
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.8e-160 570.5 502 58.0
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 2.6e-159 566.6 501 57.1
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 2.6e-159 566.6 502 56.8
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 3.4e-159 566.2 507 55.6
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 5.8e-159 565.5 500 56.8
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 7.5e-159 565.1 486 57.6
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.3e-158 564.3 444 62.8
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.0e-155 554.7 501 55.7
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.7e-155 553.9 502 56.8
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 8.6e-155 551.6 476 57.1
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 1.6e-153 547.4 491 56.6
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 1.6e-153 547.4 500 56.4
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.3e-152 543.5 513 56.7
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 3.4e-151 539.7 526 53.0
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.4e-151 539.3 502 54.8
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 9.9e-151 538.1 504 53.8
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.1e-149 534.6 492 56.1
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 5.4e-149 532.3 492 55.7
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 5.1e-147 525.8 503 53.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.9e-146 523.9 491 55.2
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 6.2e-145 518.8 425 60.7
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 6.2e-145 518.8 520 51.0
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.1e-144 518.1 522 52.5
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 2.4e-144 516.9 502 53.2
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 3.4e-143 513.1 503 53.1
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.9e-142 509.2 508 53.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.0e-139 501.5 495 52.3
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 4.0e-136 489.6 497 51.1
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 1.2e-135 488.0 407 59.7
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.5e-135 487.6 435 57.0
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 6.4e-134 482.3 437 57.0
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.1e-133 481.5 535 47.5
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 3.5e-132 476.5 482 50.8
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 1.7e-131 474.2 399 57.6
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 2.1e-129 467.2 400 56.8
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 1.4e-128 464.5 419 57.0
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 5.3e-128 462.6 506 47.8
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 6.9e-128 462.2 415 57.6
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 2.0e-127 460.7 511 48.5
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 2.0e-127 460.7 506 48.4
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 9.9e-127 458.4 530 48.5
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 2.9e-126 456.8 511 46.8
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 3.2e-125 453.4 511 46.8
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 1.6e-124 451.1 504 48.8
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 1.6e-124 451.1 504 48.8
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 3.5e-124 449.9 500 48.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 5.1e-123 446.0 499 45.9
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.1e-122 444.9 503 46.7
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.5e-122 444.5 502 49.0
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 2.5e-122 443.7 532 45.9
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 5.6e-122 442.6 532 45.9
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 7.4e-122 442.2 518 48.3
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 7.4e-122 442.2 502 48.8
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 4.5e-119 433.0 330 61.8
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.4e-117 427.9 519 46.1
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 2.3e-115 420.6 354 60.2
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 4.3e-114 416.4 319 61.1
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 5.3e-112 409.5 503 44.7
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 4.5e-111 406.4 432 49.5
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.3e-110 404.8 477 45.7
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 1.5e-106 391.3 335 56.1
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.6e-105 387.9 557 42.4
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 1.2e-103 381.7 499 44.3
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 6.5e-102 375.9 338 53.3
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 3.6e-100 370.2 501 40.9
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 4.6e-100 369.8 354 55.4
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 5.5e-93 346.3 511 41.3
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.5e-87 328.2 389 46.0
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.0e-83 315.5 234 62.0
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.0e-75 287.3 283 56.5
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.4e-64 251.9 194 60.8
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 3.3e-61 240.7 286 50.3
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 5.7e-58 229.9 184 57.1
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.0e-51 207.2 184 60.3
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.6e-44 185.3 170 58.8
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 6.4e-41 173.3 151 62.3
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.1e-40 172.6 171 55.0
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 4.1e-40 170.6 164 58.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.9e-38 164.1 145 62.1
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.1e-21 109.4 205 29.8
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 8.4e-17 93.2 93 54.8
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.6e-15 87.4 60 65.0
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 1.0e-14 86.3 166 30.1
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 9.6e-13 79.7 68 61.8
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 1.4e-11 75.9 81 50.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.9e-09 68.2 42 73.8
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.3e-06 59.3 50 62.0


User provided reference genes

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