Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.4e-20 102.4 69 100.0
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.2e-16 89.4 66 86.4
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 6.2e-13 77.0 65 61.5
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 6.2e-13 77.0 65 61.5
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 8.1e-13 76.6 64 75.0
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.1e-12 76.3 65 78.5
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 65 60.0
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 2.4e-12 75.1 65 60.0
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-12 74.7 65 60.0
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 4.0e-12 74.3 65 56.9
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 5.3e-12 73.9 65 69.2
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 5.3e-12 73.9 65 58.5
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 56.9
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.0e-11 72.0 65 72.3
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-11 72.0 65 63.1
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.4e-11 71.2 65 69.2
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 4.5e-11 70.9 64 68.8
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 5.8e-11 70.5 66 56.1
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 5.8e-11 70.5 66 54.5
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 7.6e-11 70.1 65 56.9
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 9.9e-11 69.7 65 55.4
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-10 69.3 65 72.3
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-10 69.3 65 64.6
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 1.7e-10 68.9 64 54.7
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.7e-10 68.9 65 73.8
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 2.2e-10 68.6 65 75.4
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 2.2e-10 68.6 65 70.8
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 2.9e-10 68.2 64 76.6
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 3.8e-10 67.8 64 56.2
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 3.8e-10 67.8 64 56.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 3.8e-10 67.8 65 52.3
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 3.8e-10 67.8 65 52.3
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 3.8e-10 67.8 65 52.3
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 3.8e-10 67.8 65 52.3
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 3.8e-10 67.8 65 52.3
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 4.9e-10 67.4 66 51.5
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.4e-10 67.0 66 59.1
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.4e-10 67.0 65 78.5
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 67.7
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 51.5
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.4e-09 65.9 62 54.8
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.4e-09 65.9 65 76.9
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 63.6
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 51.5
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.4e-09 65.1 65 66.2
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 2.4e-09 65.1 64 54.7
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 4.2e-09 64.3 66 53.0
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 51.5
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 51.5
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 51.5
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 51.5
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 48.5
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 48.5
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 69.7
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 9.3e-09 63.2 61 49.2
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 9.3e-09 63.2 72 48.6
Lsat_1_v5_gn_2_86260 Lactuca sativa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 65.2
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 65 64.6
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 65 64.6
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.6e-08 62.4 64 54.7
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.6e-08 62.4 65 75.4
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.6e-08 62.4 66 48.5
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.1e-08 62.0 66 56.1
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-08 62.0 66 50.0
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-08 62.0 66 50.0
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.1e-08 62.0 66 50.0
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.1e-08 62.0 66 60.6
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.1e-08 62.0 65 60.0
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 50.0
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 2.7e-08 61.6 64 62.5
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 51.5
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 65 56.9
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.7e-08 61.6 69 52.2
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.7e-08 61.6 63 50.8
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 4.6e-08 60.8 66 53.0
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 6.0e-08 60.5 66 50.0
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 6.0e-08 60.5 66 60.6
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 6.0e-08 60.5 66 53.0
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 6.0e-08 60.5 64 62.5
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 7.9e-08 60.1 66 50.0
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 7.9e-08 60.1 66 56.1
Ca_20747_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.3e-07 59.3 63 74.6
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 63.6
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 66.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.8e-07 58.9 65 50.8
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 71 46.5
Gohir.A11G167800 Gossypium hirsutum HOM05D042116 ORTHO05D002978 2.3e-07 58.5 66 68.2
Peaxi162Scf00479g00427 Petunia axillaris HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 65.2
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 53.0
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 3.0e-07 58.2 62 51.6
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 3.0e-07 58.2 61 65.6
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 3.0e-07 58.2 64 71.9
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 3.9e-07 57.8 65 61.5
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.9e-07 57.8 64 60.9
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.9e-07 57.8 66 60.6
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 5.1e-07 57.4 66 60.6
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 6.7e-07 57.0 65 60.0
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 6.7e-07 57.0 65 60.0
Phvul.004G047000 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 6.7e-07 57.0 63 73.0
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 8.7e-07 56.6 65 61.5
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 8.7e-07 56.6 65 58.5
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 8.7e-07 56.6 68 55.9
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 8.7e-07 56.6 66 62.1
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 64 71.9
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.1e-06 56.2 60 50.0
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 1.1e-06 56.2 62 58.1
Sabra04G0074800 Salix brachista HOM05D002873 ORTHO05D002978 1.1e-06 56.2 65 72.3
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 64 60.9
Nitab4.5_0000612g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 64 71.9
Phvul.004G047200 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.5e-06 55.8 63 69.8
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.5e-06 55.8 65 67.7
Cfa018418 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 62.1
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.9e-06 55.5 64 62.5
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 62.1
Lalb_Chr02g0158511 Lupinus albus HOM05D002873 ORTHO05D002978 1.9e-06 55.5 65 69.2
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 56.1
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 45.5
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 2.5e-06 55.1 58 65.5
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 67 46.3
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 44.6
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 46.2
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 44.6
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 44.6
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 46.2
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 3.3e-06 54.7 66 56.1
Duzib133G0796 Durio zibethinus HOM05D020367 ORTHO05D002978 4.3e-06 54.3 66 62.1
Duzib133G0848 Durio zibethinus HOM05D020367 ORTHO05D002978 4.3e-06 54.3 66 62.1
Potri.004G107100 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.3e-06 54.3 65 70.8
Potri.004G107800 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.3e-06 54.3 65 70.8
Potri.004G107900 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.3e-06 54.3 65 70.8
HanXRQChr14g0448071 Helianthus annuus HOM05D002873 ORTHO05D002978 5.6e-06 53.9 64 43.8
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 5.6e-06 53.9 66 60.6
Phvul.004G046900 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 7.4e-06 53.5 64 70.3
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 55.4
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 55.4
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 69.2
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 53.8
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 50.8


User provided reference genes

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