Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 9.3e-22 106.3 67 100.0
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 7.6e-16 86.7 66 86.4
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 1.3e-15 85.9 66 68.2
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 6.4e-15 83.6 66 66.7
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 6.4e-15 83.6 66 66.7
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.9e-14 82.0 66 65.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 2.4e-14 81.6 64 64.1
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 2.4e-14 81.6 66 65.2
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 4.2e-14 80.9 65 66.2
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 4.2e-14 80.9 65 66.2
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 5.5e-14 80.5 66 77.3
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 5.5e-14 80.5 66 63.6
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 7.1e-14 80.1 66 74.2
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 7.1e-14 80.1 66 63.6
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.2e-13 79.3 64 76.6
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-13 79.3 66 60.6
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.1e-13 78.6 62 64.5
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.7e-13 78.2 66 77.3
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.7e-13 78.2 67 59.7
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 1.0e-12 76.3 66 60.6
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 1.0e-12 76.3 66 60.6
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 1.0e-12 76.3 64 62.5
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 1.8e-12 75.5 67 59.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 2.3e-12 75.1 66 65.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 59.1
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 59.1
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 59.1
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 74.2
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 60.6
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 75.8
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.9e-12 74.3 67 70.1
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 3.9e-12 74.3 66 69.7
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 5.1e-12 73.9 66 74.2
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 8.7e-12 73.2 66 57.6
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 8.7e-12 73.2 66 63.6
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 1.1e-11 72.8 67 55.2
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.5e-11 72.4 67 64.2
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.5e-11 72.4 66 72.7
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.5e-11 72.4 66 74.2
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.9e-11 72.0 67 55.2
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-11 72.0 66 62.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 5.6e-11 70.5 65 70.8
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.6e-11 70.5 66 71.2
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.6e-11 70.5 66 71.2
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 7.4e-11 70.1 62 61.3
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 9.6e-11 69.7 64 59.4
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 66.7
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 67.2
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 71.2
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 59.7
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 53.7
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 52.2
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 56.7
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 62.7
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 59.7
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 53.0
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 68.2
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.7e-10 67.8 62 53.2
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 65.7
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 4.8e-10 67.4 66 53.0
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 4.8e-10 67.4 64 70.3
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 4.8e-10 67.4 66 57.6
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 4.8e-10 67.4 62 66.1
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 6.2e-10 67.0 67 55.2
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 6.2e-10 67.0 67 59.7
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 54.5
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 8.2e-10 66.6 65 69.2
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 8.2e-10 66.6 63 54.0
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 1.1e-09 66.2 71 52.1
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 69.7
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 67.2
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 53.0
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 53.0
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 53.0
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 53.0
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 1.4e-09 65.9 61 72.1
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 68.2
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 68.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 1.8e-09 65.5 67 67.2
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 1.8e-09 65.5 65 60.0
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 69.7
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 66.7
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 69 62.3
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 65.7
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 53.7
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 3.1e-09 64.7 61 57.4
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.1e-09 64.7 67 62.7
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 51.5
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 51.5
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 51.5
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 4.0e-09 64.3 65 67.7
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 64.2
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 51.5
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.9e-09 63.5 66 68.2
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 6.9e-09 63.5 65 64.6
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 9.0e-09 63.2 66 66.7
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.2e-08 62.8 67 65.7
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.2e-08 62.8 70 52.9
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 1.2e-08 62.8 73 47.9
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 1.5e-08 62.4 66 66.7
Lsat_1_v5_gn_2_86260 Lactuca sativa HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 61.2
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 63.6
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 2.6e-08 61.6 67 50.7
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.6e-08 61.6 66 63.6
Gohir.A11G167800 Gossypium hirsutum HOM05D042116 ORTHO05D002978 2.6e-08 61.6 67 64.2
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 3.4e-08 61.2 60 68.3
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 63.6
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 4.5e-08 60.8 67 61.2
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 7.6e-08 60.1 65 64.6
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 7.6e-08 60.1 65 56.9
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 62.7
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 65.2
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 68.2
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 63.1
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 59.1
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 49.3
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 53.7
Peaxi162Scf00479g00427 Petunia axillaris HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 64.2
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 60 65.0
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 62.7
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 2.2e-07 58.5 63 52.4
AUR62008938 Chenopodium quinoa HOM05D002873 ORTHO05D002978 2.9e-07 58.2 88 52.3
Medtr6g016570 Medicago truncatula HOM05D015498 ORTHO05D015153 2.9e-07 58.2 65 66.2
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 3.8e-07 57.8 67 59.7
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 60 50.0
MELO3C022079.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.9e-07 57.4 34 82.4
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 6.5e-07 57.0 67 46.3
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 6.5e-07 57.0 65 64.6
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 6.5e-07 57.0 67 53.7
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 46.2
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 47.7
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 46.2
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 46.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 47.7
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 53.7
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 53.7
Ca_20747_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 8.4e-07 56.6 63 63.5
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 1.1e-06 56.2 111 37.8
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 58.2
Cfa018418 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.4e-06 55.8 67 58.2
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.4e-06 55.8 71 47.9
Duzib133G0796 Durio zibethinus HOM05D020367 ORTHO05D002978 1.9e-06 55.5 67 61.2
Duzib133G0848 Durio zibethinus HOM05D020367 ORTHO05D002978 1.9e-06 55.5 67 61.2
FAN05G2856 Fragaria x ananassa HOM05D040180 ORTHO05D035606 1.9e-06 55.5 67 62.7
Cc07_g04790 Coffea canephora HOM05D002873 ORTHO05D002978 2.5e-06 55.1 67 61.2
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 2.5e-06 55.1 58 65.5
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 67 59.7
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 67 59.7
Phvul.004G047000 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 3.2e-06 54.7 65 61.5
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 67 58.2
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 60.6
Ca_06720_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.2e-06 54.3 69 62.3
HanXRQChr14g0448071 Helianthus annuus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 65 46.2
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.2e-06 54.3 90 45.6
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 68 47.1
Medtr7g018280 Medicago truncatula HOM05D002873 ORTHO05D002978 5.5e-06 53.9 98 39.8
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 44.8
Phvul.004G047200 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 5.5e-06 53.9 65 61.5
Sabra04G0074800 Salix brachista HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 62.1
PGSC0003DMG400010052 Solanum tuberosum HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 58.2
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 60.6
CiPaw.04G005400 Carya illinoinensis HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 60.6
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 7.1e-06 53.5 34 76.5
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 7.1e-06 53.5 34 76.5
Nitab4.5_0000612g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 65 61.5
Sc10g0001460 Simmondsia chinensis HOM05D002873 ORTHO05D002978 7.1e-06 53.5 34 79.4
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 62.1
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 62.1
Lalb_Chr02g0158511 Lupinus albus HOM05D002873 ORTHO05D002978 9.3e-06 53.1 63 60.3
Lalb_Chr21g0318071 Lupinus albus HOM05D015498 ORTHO05D015153 9.3e-06 53.1 65 61.5
SpUn0185_0020 Schrenkiella parvula HOM05D002873 ORTHO05D002978 9.3e-06 53.1 65 61.5
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 62.1


User provided reference genes

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