Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.1e-116 421.4 212 100.0
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.2e-103 377.9 205 89.3
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 6.8e-103 377.5 205 88.8
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 3.7e-101 371.7 212 86.3
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.4e-100 369.8 212 87.3
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 7.8e-99 364.0 227 79.7
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 7.3e-97 357.5 212 81.6
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.1e-95 353.6 209 82.3
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.4e-95 353.2 212 80.7
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.0e-95 351.7 189 89.4
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.2e-95 351.3 212 80.2
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 6.8e-95 350.9 199 86.4
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 8.9e-95 350.5 212 80.2
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 5.8e-94 347.8 209 80.9
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.7e-93 346.3 212 79.2
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 2.9e-93 345.5 212 78.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 4.6e-91 338.2 212 76.4
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.0e-90 337.0 209 78.9
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 2.5e-89 332.4 212 76.9
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 5.6e-89 331.3 210 78.6
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 3.6e-88 328.6 205 77.6
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 4.0e-87 325.1 210 75.7
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 9.0e-87 323.9 212 77.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.0e-86 322.8 213 75.6
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 5.8e-86 321.2 210 75.7
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 1.3e-85 320.1 210 74.3
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 6.4e-85 317.8 212 73.6
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 8.4e-85 317.4 205 74.6
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.4e-84 316.6 213 75.1
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.4e-84 316.6 212 72.2
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.9e-84 316.2 212 72.2
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.6e-83 313.2 210 71.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.5e-83 312.0 210 73.3
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 7.9e-83 310.8 213 71.4
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.0e-82 310.5 211 73.5
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.7e-82 309.7 213 73.7
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 1.7e-82 309.7 205 74.1
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.7e-82 309.7 205 74.1
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.0e-82 308.9 213 72.3
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 3.0e-82 308.9 213 73.7
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 3.9e-82 308.5 217 72.4
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 5.1e-82 308.1 212 71.7
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 5.1e-82 308.1 210 70.5
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.7e-82 307.4 213 71.8
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.7e-82 307.4 213 71.8
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.7e-82 307.4 213 71.8
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.1e-81 307.0 213 70.4
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.1e-81 307.0 213 71.8
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 1.5e-81 306.6 213 71.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 3.3e-81 305.4 205 73.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 4.3e-81 305.1 205 72.2
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 4.3e-81 305.1 210 71.4
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 9.6e-81 303.9 210 71.4
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 9.6e-81 303.9 210 71.4
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 9.6e-81 303.9 210 71.4
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 1.3e-80 303.5 205 72.7
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.6e-80 303.1 210 70.5
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.6e-80 303.1 210 69.5
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.1e-80 302.8 208 71.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.8e-80 302.4 210 71.0
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 3.6e-80 302.0 210 70.5
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.6e-80 302.0 213 69.0
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 4.8e-80 301.6 205 72.2
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.8e-80 301.6 208 71.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.8e-80 301.6 210 71.4
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.3e-79 298.1 206 71.4
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 6.9e-79 297.7 214 72.0
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 9.0e-79 297.4 214 71.5
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.4e-78 295.4 205 70.2
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 7.6e-78 294.3 210 69.0
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 1.3e-77 293.5 213 71.8
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 1.3e-77 293.5 213 71.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.3e-77 293.5 213 71.8
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 2.2e-77 292.7 194 72.2
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 2.9e-77 292.4 216 67.1
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 4.9e-77 291.6 208 68.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.9e-76 289.7 181 77.3
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 2.4e-76 289.3 213 71.4
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 2.4e-76 289.3 197 70.6
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 7.9e-75 284.3 212 68.4
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.8e-74 283.1 201 68.2
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.3e-74 282.7 212 68.4
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 5.1e-74 281.6 212 67.5
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 6.7e-74 281.2 206 65.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 4.3e-73 278.5 212 64.6
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.6e-72 276.6 212 64.6
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 6.2e-72 274.6 212 64.2
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.1e-72 274.2 237 62.0
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.1e-71 273.9 212 64.2
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.1e-71 273.9 212 63.7
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 3.1e-71 272.3 212 63.2
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.1e-71 272.3 208 62.0
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 4.0e-71 271.9 212 64.2
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 4.0e-71 271.9 212 63.2
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.0e-70 269.6 205 63.9
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 4.5e-70 268.5 212 63.2
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 7.6e-70 267.7 216 62.5
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 7.6e-70 267.7 214 61.2
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.0e-69 267.3 205 63.9
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.0e-69 267.3 200 69.5
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.3e-69 266.9 172 72.1
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.7e-69 266.5 193 67.9
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 8.4e-69 264.2 191 69.6
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.2e-68 261.9 212 62.7
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-67 260.4 186 66.7
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.1e-67 259.6 155 81.9
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.3e-66 256.1 210 64.8
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.6e-64 250.0 214 65.0
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 1.6e-56 223.4 167 59.9
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.8e-56 221.9 144 70.8
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 4.3e-49 198.7 210 50.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.4e-47 193.7 212 52.4
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 2.7e-43 179.5 136 72.1
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.1e-42 175.3 113 72.6
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 7.5e-33 144.8 179 38.5
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 3.1e-31 139.4 171 43.9
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.0e-29 134.4 79 74.7
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 4.2e-28 129.0 171 42.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 5.5e-28 128.6 114 50.0
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.7e-27 125.6 63 88.9
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.4e-23 114.0 116 54.3
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 2.3e-18 96.7 89 61.8
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 4.4e-17 92.4 79 60.8
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 9.8e-17 91.3 190 33.2
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.1e-15 87.8 46 82.6
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 4.3e-12 75.9 59 59.3
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 1.0e-10 71.2 55 60.0
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 4.0e-10 69.3 83 47.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.2e-09 67.8 78 46.2
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 1.7e-08 63.9 41 70.7
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 8.3e-08 61.6 40 75.0
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.1e-07 61.2 49 61.2
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.4e-07 60.1 158 30.4


User provided reference genes

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