Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 3.4e-250 867.8 427 100.0
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.4e-150 537.0 418 64.1
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.8e-150 536.6 418 63.9
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.6e-143 513.5 422 61.4
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.5e-141 506.9 419 59.4
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 9.7e-141 504.2 419 61.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 4.8e-140 501.9 418 58.9
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.4e-139 500.4 400 61.8
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 2.4e-139 499.6 415 60.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 5.0e-137 491.9 426 57.3
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.2e-135 487.3 420 57.1
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.6e-135 486.9 419 56.8
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.7e-135 486.1 426 58.0
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.7e-135 485.3 409 57.9
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.0e-134 484.2 422 57.1
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.0e-134 482.6 422 56.9
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.0e-134 482.3 407 57.7
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.5e-133 480.3 407 57.5
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.6e-133 479.6 407 58.2
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.3e-132 477.2 426 56.6
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 3.7e-132 475.7 419 57.8
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 8.3e-132 474.6 407 58.5
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 8.3e-132 474.6 407 56.8
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 7.0e-131 471.5 427 56.9
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.6e-130 470.3 408 57.8
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.7e-130 469.5 407 56.3
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.0e-129 467.6 426 56.1
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.0e-129 465.3 426 55.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 5.0e-129 465.3 429 54.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 8.6e-129 464.5 401 57.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 3.3e-128 462.6 426 55.9
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 7.2e-128 461.5 393 56.2
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.8e-127 459.5 420 57.1
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.4e-126 457.2 400 55.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 2.0e-125 453.4 411 56.2
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.4e-125 452.2 410 56.3
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 7.5e-125 451.4 400 57.0
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 9.8e-125 451.1 400 54.5
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 9.8e-125 451.1 399 57.1
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 8.3e-124 448.0 394 54.1
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 3.1e-123 446.0 401 56.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 9.2e-123 444.5 384 59.1
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.6e-122 443.7 410 55.1
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.6e-122 443.7 394 55.1
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.6e-122 443.7 409 53.3
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 5.9e-122 441.8 372 58.3
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.6e-120 435.3 394 56.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 5.6e-120 435.3 395 55.7
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.6e-119 432.6 400 53.2
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.3e-118 429.9 399 52.9
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.2e-118 428.7 399 52.6
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.5e-117 427.2 385 55.8
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.0e-117 426.8 410 52.4
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.6e-117 426.4 391 52.7
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 9.8e-117 424.5 409 51.6
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 6.4e-116 421.8 394 51.5
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.1e-115 421.0 410 51.7
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.4e-115 420.6 422 51.2
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-115 420.2 381 56.4
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.2e-115 419.5 400 52.8
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 2.7e-114 416.4 430 51.4
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.3e-113 413.3 400 51.2
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 6.6e-113 411.8 403 51.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.1e-111 406.8 407 51.1
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.1e-111 406.8 388 51.3
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 4.7e-111 405.6 407 50.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.4e-110 404.1 404 49.3
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 2.3e-110 403.3 400 50.2
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 4.0e-110 402.5 400 50.2
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 8.9e-110 401.4 401 50.4
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.5e-109 400.6 432 48.4
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 5.8e-109 398.7 408 48.8
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 9.8e-109 397.9 400 50.2
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 4.9e-108 395.6 410 48.8
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.1e-107 394.4 414 48.8
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 3.2e-107 392.9 407 49.6
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 9.2e-107 391.3 407 48.4
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 1.6e-106 390.6 407 48.6
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.7e-106 389.8 389 49.6
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 6.0e-106 388.7 400 49.5
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 3.0e-105 386.3 380 49.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 3.9e-105 386.0 389 48.8
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 6.6e-105 385.2 407 50.4
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 4.3e-104 382.5 389 46.8
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 7.3e-104 381.7 407 47.4
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.2e-103 380.9 406 47.8
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 6.2e-103 378.6 368 54.3
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.8e-102 377.1 385 50.4
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-99 366.7 385 49.4
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.1e-96 357.8 418 47.6
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.5e-96 356.7 357 51.8
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 2.5e-96 356.7 395 48.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 4.3e-96 355.9 354 51.1
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-95 353.2 354 50.8
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-94 351.3 356 49.4
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.5e-93 347.4 301 54.5
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 7.6e-93 345.1 351 50.1
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 9.9e-93 344.7 380 48.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.2e-91 339.7 345 49.9
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 3.9e-89 332.8 288 57.3
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 5.6e-88 328.9 398 44.5
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.4e-85 319.7 324 51.9
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.1e-75 285.4 296 52.4
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 6.0e-74 282.3 406 41.6
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-73 280.8 254 55.5
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 2.5e-72 276.9 409 40.8
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.1e-71 273.9 371 43.1
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.0e-68 265.0 289 47.1
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.5e-67 260.4 174 67.2
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 5.5e-67 259.2 300 45.7
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 4.6e-66 256.1 250 53.6
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.0e-66 255.8 236 53.4
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 4.0e-62 243.0 395 36.2
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 9.0e-62 241.9 207 56.0
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.4e-61 240.0 196 56.6
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.9e-59 234.2 274 48.2
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 3.4e-53 213.4 178 56.2
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 7.7e-53 212.2 191 57.1
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.0e-52 209.5 169 59.2
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.7e-44 184.5 235 47.7
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 3.2e-43 180.3 254 39.8
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.8e-41 174.5 154 55.8
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 7.4e-40 169.1 157 54.8
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-39 168.3 137 62.0
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 2.8e-39 167.2 180 47.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.7e-39 166.8 324 34.6
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 5.9e-37 159.5 177 50.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.2e-35 153.7 279 36.6
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 2.3e-33 147.5 178 45.5
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 2.4e-30 137.5 120 52.5
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-27 127.9 113 57.5
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.2e-25 119.8 112 55.4
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-23 112.5 116 47.4
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.1e-22 110.5 214 33.2
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-21 107.8 116 45.7
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.2e-19 100.1 97 52.6
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.9e-15 86.7 87 47.1
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.2e-11 73.6 71 49.3
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 7.5e-08 62.8 86 37.2
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 3.2e-06 57.4 76 35.5
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 7.0e-06 56.2 52 48.1
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 7.0e-06 56.2 56 46.4


User provided reference genes

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