Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.6e-147 524.6 279 100.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.1e-111 407.1 262 80.9
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.3e-106 389.4 262 77.5
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 6.7e-106 387.9 267 76.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.1e-105 387.1 269 76.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.1e-105 387.1 269 76.2
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.5e-105 386.7 262 76.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.5e-105 386.0 262 77.1
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.3e-105 385.6 262 76.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 4.3e-105 385.2 279 74.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.3e-105 385.2 262 76.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 5.6e-105 384.8 262 76.7
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.6e-105 384.8 265 74.3
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-104 383.6 264 76.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.8e-104 382.5 262 76.0
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 4.8e-104 381.7 262 75.6
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 4.8e-104 381.7 262 75.2
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.1e-103 380.6 262 74.8
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.4e-103 380.2 262 75.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.4e-103 380.2 262 76.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.8e-103 379.8 270 74.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.1e-103 379.0 270 74.1
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 3.1e-103 379.0 262 74.8
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 5.3e-103 378.3 262 75.6
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.0e-103 377.5 270 73.3
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 9.0e-103 377.5 262 75.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.6e-102 375.9 262 74.4
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 7.6e-102 374.4 262 74.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.3e-101 373.6 268 74.6
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-101 373.6 270 74.4
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.2e-101 372.9 271 74.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.9e-101 372.5 262 74.4
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 6.4e-101 371.3 262 74.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.4e-100 370.2 262 73.7
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.9e-100 369.8 262 74.8
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.2e-100 369.0 262 72.9
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.2e-100 369.0 262 73.7
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.2e-100 369.0 263 74.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 4.2e-100 368.6 270 73.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.5e-100 368.2 270 73.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 5.5e-100 368.2 262 73.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.5e-100 368.2 262 74.4
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 7.1e-100 367.9 262 74.4
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 7.1e-100 367.9 262 74.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 9.3e-100 367.5 262 72.5
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.2e-99 367.1 262 74.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.6e-99 366.7 270 72.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.6e-99 366.7 270 70.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.7e-99 365.9 262 73.3
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.6e-99 365.2 270 70.0
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.9e-99 364.4 262 72.1
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 7.9e-99 364.4 262 72.5
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.0e-98 364.0 262 72.5
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.3e-98 363.6 262 72.1
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-98 363.6 270 71.1
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.3e-98 363.6 270 70.7
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.8e-98 363.2 270 70.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.3e-98 362.8 270 71.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.3e-98 362.8 263 73.8
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.9e-98 362.1 270 69.6
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 6.7e-98 361.3 262 71.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 8.7e-98 360.9 262 73.3
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.1e-97 360.5 271 71.2
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.1e-97 360.5 270 69.3
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.5e-97 360.1 270 69.3
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.5e-97 359.4 270 68.9
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 2.5e-97 359.4 262 73.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 4.3e-97 358.6 262 73.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 5.6e-97 358.2 270 72.2
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.4e-97 357.8 314 64.3
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 9.6e-97 357.5 262 71.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.6e-97 357.5 262 70.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.3e-96 357.1 264 70.5
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.7e-96 355.5 266 70.3
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.8e-96 355.1 262 70.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 4.8e-96 355.1 262 71.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 6.2e-96 354.8 262 70.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 8.1e-96 354.4 266 71.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.8e-95 353.2 263 70.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.4e-95 352.8 262 72.9
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 6.9e-95 351.3 262 69.1
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 9.0e-95 350.9 262 69.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 9.0e-95 350.9 262 71.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-94 350.5 263 70.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.0e-94 349.7 263 69.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.5e-94 348.6 263 69.2
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.6e-94 347.8 256 71.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-93 347.1 262 69.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.3e-93 347.1 263 68.8
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.3e-93 347.1 263 72.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.2e-93 346.3 263 68.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.8e-93 345.5 263 70.3
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.9e-93 345.1 264 68.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 6.5e-93 344.7 263 69.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.9e-92 343.2 263 68.4
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.9e-92 343.2 262 69.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.5e-92 342.8 264 68.6
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.2e-91 340.5 262 69.1
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 3.9e-90 335.5 264 67.8
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.7e-90 334.7 297 61.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.1e-89 334.0 262 67.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 3.3e-89 332.4 262 67.9
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 9.6e-89 330.9 262 66.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.5e-86 323.6 237 73.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.6e-86 322.8 230 74.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.7e-85 320.1 262 65.3
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 6.5e-85 318.2 272 63.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.5e-84 316.2 264 64.4
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.2e-84 315.5 268 63.8
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.2e-84 314.7 268 63.1
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.2e-83 313.9 273 63.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 3.6e-83 312.4 242 68.6
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.6e-83 312.0 271 67.5
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.9e-81 306.6 233 68.2
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-80 303.9 221 71.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.6e-75 285.8 266 59.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.8e-74 283.5 208 71.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.0e-74 282.7 262 62.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.5e-73 280.4 265 59.6
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 6.9e-71 271.6 262 59.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.7e-64 250.4 262 54.6
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-60 237.7 264 53.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.0e-58 231.1 180 68.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 6.7e-58 228.4 266 48.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.5e-54 216.1 271 45.4
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.9e-53 213.0 313 45.7
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.9e-53 213.0 183 60.7
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.4e-50 204.1 276 47.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.9e-45 186.4 240 44.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.7e-40 170.6 137 72.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 9.2e-39 164.9 221 49.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.7e-37 160.6 140 63.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 5.6e-36 155.6 136 65.4
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.6e-36 155.6 238 42.9
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 3.6e-35 152.9 129 68.2
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.0e-34 149.4 115 63.5
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.9e-30 135.6 91 75.8
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 9.5e-28 128.3 127 62.2
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.8e-27 126.7 110 61.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.7e-27 125.9 84 81.0
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 3.4e-25 119.8 100 63.0
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 7.5e-25 118.6 109 62.4
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.4e-24 115.5 220 39.1
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.9e-23 114.0 89 64.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.5e-22 109.8 89 74.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.3e-21 107.8 265 31.7
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.1e-20 104.8 72 77.8
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.8e-19 100.1 73 74.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.4e-15 87.0 58 70.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.1e-11 72.0 73 60.3
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.8e-08 63.2 182 28.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 4.1e-07 59.7 44 68.2
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 2.7e-06 57.0 90 41.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.5e-06 56.6 126 33.3
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 4.6e-06 56.2 32 78.1


User provided reference genes

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