Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 7.1e-75 283.9 146 100.0
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.7e-28 129.8 84 81.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.1e-19 100.5 123 49.6
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-18 96.7 84 60.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 3.6e-18 95.5 88 58.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 6.1e-18 94.7 84 59.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 8.0e-18 94.4 84 56.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.0e-17 94.0 84 57.1
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.3e-17 92.8 84 58.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.9e-17 92.0 84 54.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.2e-17 91.7 84 56.0
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 5.2e-17 91.7 123 45.5
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.7e-17 91.3 84 57.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.1e-16 90.5 84 56.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.5e-16 90.1 84 58.3
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.0e-16 89.7 84 57.1
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.0e-16 89.7 84 56.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.6e-16 89.4 84 58.3
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.3e-16 89.0 86 55.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.4e-16 88.6 84 56.0
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 5.7e-16 88.2 84 56.0
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 9.7e-16 87.4 84 57.1
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.3e-15 87.0 84 54.8
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.7e-15 86.7 88 52.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.2e-15 86.3 84 57.1
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.2e-15 86.3 84 54.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.8e-15 85.9 84 57.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.7e-15 85.5 84 54.8
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 4.8e-15 85.1 84 54.8
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 4.8e-15 85.1 84 53.6
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 6.3e-15 84.7 84 54.8
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 8.2e-15 84.3 84 54.8
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-14 84.0 84 56.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-14 84.0 84 56.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.1e-14 84.0 84 53.6
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.1e-14 84.0 84 56.0
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-14 84.0 84 53.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.1e-14 84.0 86 53.5
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.4e-14 83.6 84 54.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.8e-14 83.2 84 53.6
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.8e-14 83.2 91 53.8
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.8e-14 83.2 91 53.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.8e-14 83.2 89 53.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.4e-14 82.8 84 52.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.4e-14 82.8 84 53.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.1e-14 82.4 85 54.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.1e-14 82.4 84 54.8
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 7.0e-14 81.3 84 51.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.1e-14 80.9 83 53.0
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 9.1e-14 80.9 88 48.9
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.2e-13 80.5 84 51.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.2e-13 80.5 86 51.2
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.2e-13 80.5 92 50.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.2e-13 80.5 92 50.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.2e-13 80.5 84 52.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-13 80.5 90 54.4
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-13 80.5 84 48.8
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.6e-13 80.1 92 53.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.0e-13 79.7 92 48.9
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.5e-13 79.0 88 51.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 3.5e-13 79.0 92 50.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.5e-13 79.0 84 50.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.5e-13 79.0 92 47.8
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 5.9e-13 78.2 92 50.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 5.9e-13 78.2 92 50.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 7.7e-13 77.8 84 52.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.7e-13 77.8 90 50.0
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-12 77.4 92 54.3
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.0e-12 77.4 93 50.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.0e-12 77.4 84 51.2
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-12 77.0 84 47.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.3e-12 77.0 84 51.2
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.3e-12 77.0 84 48.8
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.3e-12 77.0 89 50.6
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.3e-12 77.0 84 48.8
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.7e-12 76.6 85 51.8
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.7e-12 76.6 88 48.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.7e-12 76.6 92 48.9
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.2e-12 76.3 85 51.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.2e-12 76.3 85 51.8
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.2e-12 76.3 85 50.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.9e-12 75.9 85 51.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.9e-12 75.9 84 46.4
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.8e-12 75.5 85 51.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.8e-12 75.5 86 50.0
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.8e-12 75.5 85 50.6
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.8e-12 75.5 93 48.4
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.8e-12 75.5 84 46.4
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.8e-12 75.5 84 46.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.8e-12 75.5 84 46.4
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.8e-12 75.5 84 51.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 5.0e-12 75.1 85 50.6
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.5e-12 74.7 88 51.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 8.5e-12 74.3 84 52.4
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 8.5e-12 74.3 88 45.5
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.1e-11 73.9 92 47.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.5e-11 73.6 84 52.4
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-11 73.6 84 45.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-11 73.2 92 47.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.9e-11 73.2 92 45.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.5e-11 72.8 85 49.4
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.2e-11 72.4 92 47.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 5.5e-11 71.6 85 49.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 7.2e-11 71.2 92 47.8
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 9.4e-11 70.9 92 45.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.4e-11 70.9 89 42.7
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.2e-10 70.5 84 51.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-10 70.5 84 45.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.2e-10 70.5 92 46.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-10 70.5 92 46.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.1e-10 69.7 89 42.7
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.1e-10 69.7 93 46.2
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.1e-10 69.7 92 45.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.7e-10 69.3 75 50.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.7e-10 69.3 92 45.7
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.6e-10 68.9 92 45.7
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.6e-10 68.9 84 46.4
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.7e-10 68.6 93 46.2
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.7e-10 68.6 90 43.3
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 8.0e-10 67.8 89 42.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 6.7e-09 64.7 86 48.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.0e-08 63.2 95 43.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.8e-07 59.3 106 37.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.1e-06 57.4 99 41.4
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 4.1e-06 55.5 86 45.3


User provided reference genes

Program Settings