Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.8e-296 1021.1 513 100.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.3e-167 592.4 529 60.1
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.1e-157 559.3 530 57.5
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 8.6e-152 541.2 536 55.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.6e-151 538.5 532 56.2
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.8e-150 536.2 525 56.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.6e-150 535.8 528 56.1
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 6.2e-150 535.0 528 56.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 6.8e-149 531.6 532 55.1
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 6.8e-149 531.6 530 54.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.5e-148 530.4 537 55.3
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.1e-146 524.2 527 55.4
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.4e-146 523.1 531 55.0
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 7.1e-146 521.5 530 55.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.1e-145 520.0 531 54.2
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.0e-144 517.7 529 54.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.9e-144 515.8 487 57.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 3.9e-144 515.8 531 53.5
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.6e-144 515.0 528 53.2
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 6.6e-144 515.0 527 54.6
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 8.7e-144 514.6 528 53.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.1e-143 514.2 533 52.9
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.9e-143 513.5 521 54.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 9.6e-143 511.1 530 55.1
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 9.6e-143 511.1 536 53.4
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.6e-142 510.4 497 55.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.1e-142 510.0 531 53.3
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 8.1e-142 508.1 541 52.3
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.4e-141 507.3 529 53.5
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.4e-141 507.3 528 54.0
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.4e-141 507.3 530 54.7
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.4e-141 507.3 530 53.0
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 5.3e-141 505.4 526 52.9
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 9.0e-141 504.6 529 53.5
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.2e-140 504.2 526 52.9
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.2e-140 504.2 550 53.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.5e-140 503.8 532 53.0
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.4e-140 502.7 530 52.5
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 7.6e-140 501.5 535 53.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.2e-139 500.0 538 52.8
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.2e-139 500.0 523 53.9
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.9e-139 499.6 526 52.5
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 4.9e-139 498.8 526 53.8
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.4e-139 498.0 461 58.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-138 497.7 528 52.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.4e-138 497.3 527 52.6
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.9e-138 496.9 522 51.0
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 5.4e-138 495.4 531 53.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.1e-138 495.0 530 52.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 9.3e-138 494.6 535 52.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.6e-137 493.8 536 52.8
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 4.6e-137 492.3 527 52.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 6.0e-137 491.9 532 51.9
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.0e-137 491.9 538 52.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 6.0e-137 491.9 528 52.5
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.9e-137 491.5 530 53.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.5e-135 487.3 510 55.5
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 5.6e-135 485.3 529 51.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 5.6e-135 485.3 516 51.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 5.6e-135 485.3 462 55.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.8e-133 480.3 526 51.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.0e-133 478.0 529 52.4
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.0e-132 476.9 494 53.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.7e-131 473.8 529 50.9
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.2e-131 473.4 535 49.7
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 8.4e-131 471.5 531 50.8
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.4e-130 469.9 530 50.8
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 4.2e-130 469.2 519 51.4
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.5e-130 468.8 528 50.0
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-129 467.6 530 49.6
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 4.6e-129 465.7 512 50.8
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.9e-129 464.9 524 48.7
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 7.9e-129 464.9 527 49.1
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.0e-128 463.0 527 50.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 5.1e-128 462.2 516 49.4
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.5e-127 460.7 520 48.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.9e-127 460.3 530 50.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.3e-127 459.5 534 48.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 5.6e-127 458.8 520 48.5
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.6e-127 458.8 525 50.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.4e-127 458.4 517 50.3
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.4e-127 458.4 538 48.9
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.3e-126 457.6 515 49.3
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.3e-126 457.6 527 49.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.8e-126 455.7 587 46.7
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.5e-124 450.7 473 52.4
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.6e-124 449.9 515 48.7
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.6e-124 449.9 533 49.0
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.6e-124 448.4 515 48.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.3e-123 447.6 527 48.6
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.2e-123 446.8 522 46.6
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.8e-123 446.0 521 48.9
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 4.9e-123 445.7 526 47.1
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 4.9e-123 445.7 457 52.3
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.5e-122 443.4 419 56.3
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.1e-121 440.3 477 50.1
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.1e-121 440.3 492 52.0
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.0e-120 438.0 386 60.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.9e-120 436.0 385 59.7
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.7e-120 435.3 524 46.9
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 6.7e-120 435.3 519 47.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.5e-119 434.1 465 50.5
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-119 434.1 521 47.2
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.5e-119 434.1 521 47.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.3e-119 432.6 521 47.2
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 4.3e-119 432.6 521 47.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.3e-119 432.6 521 47.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.3e-119 432.6 470 50.0
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.7e-119 432.2 553 45.8
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-118 431.0 505 50.7
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-118 430.6 514 47.9
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 6.3e-118 428.7 559 47.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.4e-117 426.8 435 53.1
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.2e-116 424.5 518 48.6
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.5e-113 412.9 505 48.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.9e-113 411.8 560 44.8
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.9e-112 409.5 489 49.9
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.7e-111 404.8 388 54.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 3.7e-110 402.9 384 56.2
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 6.9e-109 398.7 543 45.1
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.5e-108 396.0 380 54.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.9e-108 395.6 384 54.9
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.4e-106 391.0 539 43.8
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.4e-106 391.0 598 43.5
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.5e-106 390.2 334 57.5
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.7e-105 386.7 365 54.8
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.6e-105 386.3 449 47.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.6e-105 386.3 391 53.5
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.3e-101 372.5 454 47.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.3e-101 372.5 454 47.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 7.0e-93 345.5 362 50.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.2e-90 336.7 497 43.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.3e-83 314.7 553 38.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 5.7e-79 299.3 606 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.5e-76 289.7 473 38.7
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 3.1e-69 266.9 357 44.3
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.4e-61 240.7 346 42.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 8.0e-57 225.7 175 60.0
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.7e-54 216.9 431 37.6
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.6e-49 201.4 174 56.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.1e-48 198.7 195 48.7
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.4e-45 187.6 415 33.3
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.0e-24 117.1 195 34.9
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.8e-23 113.2 155 46.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.1e-19 100.1 185 37.8
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 6.7e-11 73.2 126 40.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-09 66.6 45 66.7


User provided reference genes

Program Settings