Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.7e-164 582.0 309 100.0
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 7.8e-156 553.9 297 97.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.0e-102 377.5 296 66.9
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.0e-102 377.5 296 66.9
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.5e-98 363.6 290 65.5
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.2e-95 354.0 294 67.0
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.5e-95 353.6 294 66.0
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.6e-95 352.8 294 62.9
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.5e-94 348.2 282 67.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.1e-93 347.4 297 61.6
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.9e-93 346.7 291 63.9
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.5e-93 346.3 293 61.8
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.2e-92 344.0 258 69.0
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.3e-91 340.5 296 61.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.8e-91 340.1 231 72.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.3e-91 339.7 328 57.6
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.0e-91 339.3 285 63.2
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 5.1e-91 338.6 279 62.7
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 6.7e-91 338.2 283 62.5
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 6.7e-91 338.2 291 62.2
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.1e-90 337.4 278 63.3
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 7.4e-90 334.7 302 61.3
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 9.7e-90 334.3 291 63.2
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.6e-89 333.6 265 62.6
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 2.2e-89 333.2 305 60.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 8.2e-89 331.3 230 70.4
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.8e-88 330.1 275 60.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.4e-88 329.7 300 59.7
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 2.4e-88 329.7 274 60.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.4e-88 329.7 287 62.4
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 4.1e-88 328.9 272 64.3
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 5.3e-88 328.6 317 57.7
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.9e-88 328.2 283 61.8
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 6.9e-88 328.2 283 62.2
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.2e-87 327.4 302 60.3
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.5e-87 327.0 230 70.4
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.0e-87 326.6 230 70.4
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.6e-87 326.2 296 59.1
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.4e-87 325.9 296 61.1
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.9e-87 325.1 296 58.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.7e-87 324.7 283 61.5
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 7.7e-87 324.7 244 66.4
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.7e-86 323.6 277 62.5
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.7e-86 323.6 279 60.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.9e-86 322.8 249 65.9
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 3.8e-86 322.4 295 56.9
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 8.5e-86 321.2 288 59.0
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.9e-85 320.1 298 58.1
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.2e-85 318.9 282 58.5
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 5.5e-85 318.5 329 54.4
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 7.2e-85 318.2 410 48.0
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 7.2e-85 318.2 246 63.8
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 9.4e-85 317.8 278 61.5
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 1.6e-84 317.0 296 58.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.1e-84 316.6 283 60.8
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 4.6e-84 315.5 249 63.1
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 4.6e-84 315.5 236 66.1
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.0e-83 314.3 284 59.2
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.0e-83 314.3 224 69.6
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.0e-83 314.3 238 66.8
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.8e-83 313.5 267 60.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 5.1e-83 312.0 285 59.6
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.1e-83 312.0 230 66.5
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.5e-82 310.5 300 59.3
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.0e-82 310.1 235 65.1
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 3.3e-82 309.3 246 65.4
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 5.7e-82 308.5 334 54.2
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.8e-81 306.2 279 60.6
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 4.8e-81 305.4 289 58.1
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.1e-80 304.3 352 51.7
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.4e-80 303.9 289 57.1
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.4e-80 303.9 276 61.2
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.1e-80 302.8 231 66.2
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 4.1e-80 302.4 297 53.5
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 6.9e-80 301.6 258 60.9
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 4.5e-79 298.9 210 69.0
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.9e-79 298.5 210 69.0
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 5.9e-79 298.5 241 66.0
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 7.7e-79 298.1 210 69.0
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.0e-78 297.7 229 64.2
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.2e-78 296.6 189 78.3
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.5e-78 295.0 320 54.1
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 8.5e-78 294.7 320 54.1
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 4.2e-77 292.4 248 58.9
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 5.5e-77 292.0 239 60.3
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 7.2e-77 291.6 274 55.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 3.6e-76 289.3 298 53.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 4.7e-76 288.9 249 62.2
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 6.1e-76 288.5 234 61.5
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.3e-75 286.6 294 56.5
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 3.9e-75 285.8 239 60.7
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 5.1e-75 285.4 287 55.4
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.1e-74 284.3 243 59.7
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.6e-74 283.1 247 59.5
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.4e-74 282.3 287 54.7
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 8.2e-73 278.1 207 63.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.8e-72 276.9 207 63.3
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.8e-72 276.9 207 63.3
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 9.1e-72 274.6 288 54.5
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-71 274.2 210 64.3
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 2.9e-70 269.6 317 53.0
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.9e-70 269.6 295 51.9
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 6.5e-70 268.5 245 59.2
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.1e-69 267.7 197 68.5
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.6e-68 263.8 259 54.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.2e-67 258.8 195 65.1
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.4e-64 250.0 210 59.5
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.6e-63 247.3 202 60.4
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.2e-53 213.0 258 47.3
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.0e-50 203.8 157 65.6
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 5.7e-50 202.2 157 63.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.3e-49 201.1 205 51.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 4.3e-45 186.0 198 48.0
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 5.7e-42 175.6 160 58.1
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 8.3e-41 171.8 134 64.2
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 1.6e-39 167.5 117 71.8
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 5.9e-39 165.6 120 68.3
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.3e-38 164.5 118 66.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 5.6e-37 159.1 121 62.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 5.6e-37 159.1 181 48.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 3.1e-35 153.3 118 64.4
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.5e-34 151.0 114 61.4
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-33 146.4 111 67.6
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.1e-29 134.8 111 61.3
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.6e-28 131.0 135 60.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.4e-27 127.9 130 51.5
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.2e-27 125.9 87 67.8
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 7.5e-26 122.1 111 53.2
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.1e-24 118.2 79 69.6
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.6e-23 114.4 106 51.9
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.6e-23 112.8 83 65.1
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.0e-22 111.7 74 70.3
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 7.6e-18 95.5 73 63.0
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.4e-16 90.5 90 52.2
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.6e-15 87.8 72 59.7
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 3.9e-14 83.2 139 43.2
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 2.5e-13 80.5 98 42.9
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 9.6e-13 78.6 48 77.1
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.0e-10 70.9 55 63.6
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 3.2e-08 63.5 60 56.7
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 7.1e-08 62.4 42 61.9
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 3.9e-06 56.6 36 69.4


User provided reference genes

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