Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 5.6e-69 264.2 141 100.0
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.1e-37 160.2 123 71.5
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 8.2e-36 154.1 123 66.7
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 1.4e-35 153.3 125 64.8
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.8e-35 152.9 122 65.6
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.4e-34 148.7 123 62.6
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.0e-33 147.1 123 61.0
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.3e-33 146.7 121 60.3
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 3.2e-32 142.1 125 58.4
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 3.2e-32 142.1 123 57.7
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 9.3e-32 140.6 121 59.5
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.3e-30 136.7 101 69.3
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 1.8e-30 136.3 123 59.3
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 3.0e-30 135.6 123 58.5
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 8.7e-30 134.0 123 54.5
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 4.3e-29 131.7 121 56.2
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 5.7e-29 131.3 125 56.8
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 2.2e-28 129.4 122 59.8
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 4.8e-28 128.3 121 53.7
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 4.5e-26 121.7 120 52.5
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.0e-25 120.6 123 55.3
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 5.0e-25 118.2 121 52.1
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 3.2e-24 115.5 111 57.7
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 4.2e-24 115.2 100 60.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 2.7e-23 112.5 119 51.3
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 2.7e-23 112.5 119 51.3
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 3.6e-23 112.1 101 58.4
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 3.6e-23 112.1 120 51.7
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 3.9e-22 108.6 122 51.6
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 3.9e-22 108.6 123 50.4
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 6.7e-22 107.8 123 49.6
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 6.7e-22 107.8 120 49.2
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 2.0e-21 106.3 114 52.6
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.0e-21 106.3 124 49.2
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 3.3e-21 105.5 120 47.5
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.3e-20 103.6 108 54.6
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 1.3e-20 103.6 123 47.2
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 6.3e-20 101.3 124 46.8
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 8.2e-20 100.9 124 45.2
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 2.4e-19 99.4 123 44.7
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 6.9e-19 97.8 83 62.7
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 1.2e-18 97.1 124 48.4
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 2.6e-18 95.9 123 43.9
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 7.7e-18 94.4 104 51.0
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 1.3e-17 93.6 124 43.5
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.3e-17 93.6 85 55.3
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 2.9e-17 92.4 124 42.7
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 2.9e-17 92.4 92 48.9
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 3.8e-17 92.0 123 43.1
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 3.8e-17 92.0 126 45.2
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 1.4e-16 90.1 120 40.0
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 3.2e-16 89.0 124 41.9
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 3.2e-16 89.0 124 41.9
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 3.2e-16 89.0 123 42.3
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 6.1e-15 84.7 59 76.3
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 2.3e-14 82.8 123 40.7
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.3e-14 82.8 123 40.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 3.9e-14 82.0 104 49.0
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 3.9e-14 82.0 113 46.9
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 6.7e-14 81.3 123 39.8
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 5.7e-13 78.2 123 38.2
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 7.4e-13 77.8 123 40.7
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 3.7e-12 75.5 123 40.7
Rhsim12G0075800 Rhododendron simsii HOM05D000660 ORTHO05D008907 4.8e-12 75.1 118 42.4
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 6.3e-12 74.7 123 35.8
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 1.1e-11 73.9 123 39.0
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 1.4e-11 73.6 123 38.2
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.8e-11 73.2 123 39.8
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.4e-11 72.8 100 44.0
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.4e-11 72.8 83 50.6
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 7.0e-11 71.2 101 43.6
MD17G1043300 Malus domestica HOM05D007214 ORTHO05D008907 2.6e-10 69.3 56 62.5
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 2.6e-10 69.3 49 69.4
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 4.5e-10 68.6 123 36.6
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.1e-08 63.9 59 57.6
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.5e-08 63.5 124 34.7
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 1.5e-08 63.5 123 35.0
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 1.9e-08 63.2 53 60.4
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 2.5e-08 62.8 47 63.8
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 3.2e-08 62.4 123 35.0
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 3.2e-08 62.4 140 33.6
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 5.5e-08 61.6 84 41.7
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 9.4e-08 60.8 80 42.5
BolC7t44254H Brassica oleracea HOM05D007214 ORTHO05D008907 2.1e-07 59.7 44 63.6
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 4.7e-07 58.5 123 32.5
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 6.1e-07 58.2 136 34.6
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.0e-06 57.4 123 32.5
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 3.0e-06 55.8 122 32.8
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 3.0e-06 55.8 98 34.7
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.2e-06 55.1 62 51.6
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 6.7e-06 54.7 114 29.8
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 6.7e-06 54.7 39 69.2
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 8.8e-06 54.3 45 55.6


User provided reference genes

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