Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 0.0e+00 1383.2 692 100.0
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.1e-239 833.6 694 59.9
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 5.6e-239 831.2 688 60.5
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.9e-235 818.1 690 59.4
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.7e-230 802.0 705 56.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 8.2e-230 800.8 709 57.8
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.4e-229 800.0 707 58.0
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.8e-229 799.7 702 57.7
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 5.9e-228 794.7 702 57.4
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 3.8e-227 792.0 707 56.9
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 6.1e-225 784.6 708 57.2
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 3.9e-224 781.9 712 56.9
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 4.3e-223 778.5 699 56.5
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 9.7e-223 777.3 723 56.3
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.8e-222 775.8 704 56.1
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.3e-222 774.6 723 56.2
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 1.4e-221 773.5 702 56.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.1e-221 772.3 704 55.7
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.0e-219 767.3 709 54.4
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.9e-218 763.1 757 52.3
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 9.4e-218 760.8 682 55.7
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.7e-217 759.2 693 55.8
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.7e-206 723.4 710 52.5
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.2e-206 723.0 707 53.6
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.4e-205 719.5 692 53.3
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.3e-203 713.8 694 53.0
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.9e-203 712.6 699 51.4
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.9e-202 709.9 708 51.4
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.0e-200 704.1 694 52.0
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 2.3e-200 703.0 698 51.4
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.1e-199 700.7 700 51.9
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.1e-199 700.7 707 49.6
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.4e-199 698.7 693 53.2
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.3e-198 697.2 707 51.1
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 4.8e-198 695.3 702 50.7
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.4e-197 693.0 693 51.9
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 5.3e-197 691.8 698 49.9
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 4.5e-196 688.7 701 50.9
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.0e-195 687.6 706 50.0
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.0e-195 687.6 707 51.3
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 3.8e-195 685.6 709 51.2
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 3.8e-195 685.6 702 50.6
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.5e-195 684.9 693 50.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 7.2e-194 681.4 701 50.2
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.1e-193 679.9 705 49.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 2.7e-193 679.5 673 53.0
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 2.7e-193 679.5 695 52.8
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 3.6e-193 679.1 709 49.1
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 6.1e-193 678.3 693 53.0
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 5.2e-192 675.2 699 49.5
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.3e-190 670.6 699 49.2
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.1e-189 667.5 571 57.8
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.4e-189 666.4 702 48.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 2.4e-189 666.4 703 49.1
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 7.0e-189 664.8 698 49.6
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.6e-185 653.7 702 48.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 2.0e-183 646.7 699 50.8
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.3e-182 644.0 703 47.8
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 3.7e-182 642.5 610 54.3
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.1e-181 639.0 691 48.0
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 7.0e-181 638.3 737 49.0
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 9.2e-181 637.9 703 47.1
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.6e-180 637.1 625 52.3
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.0e-179 634.4 715 46.4
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.7e-179 633.6 589 56.4
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 8.6e-179 631.3 701 50.2
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.1e-178 630.9 710 46.3
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.5e-175 620.5 695 46.6
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 5.7e-175 618.6 674 48.1
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 9.8e-175 617.8 678 47.3
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 9.2e-173 611.3 678 46.9
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.0e-172 610.1 510 58.0
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 6.2e-169 598.6 706 46.0
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 3.9e-163 579.3 705 44.3
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 2.3e-160 570.1 635 49.9
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.9e-158 562.4 506 54.7
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 3.5e-156 556.2 510 53.1
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 6.8e-152 542.0 455 58.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.1e-146 524.6 539 52.5
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 5.6e-146 522.3 609 48.4
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 6.4e-142 508.8 446 56.1
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.4e-141 506.9 445 56.6
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 8.1e-137 491.9 396 60.6
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 3.4e-135 486.5 614 46.3
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 5.8e-135 485.7 444 55.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 3.9e-131 473.0 552 44.7
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 1.3e-129 468.0 470 52.3
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 1.8e-115 421.0 532 43.8
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.3e-115 420.6 489 48.1
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.0e-115 420.2 438 51.4
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.9e-114 417.5 662 39.3
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.5e-111 407.9 543 41.1
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 5.0e-102 376.3 499 43.1
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.7e-89 334.7 380 45.5
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.8e-88 331.3 587 35.1
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 5.9e-87 326.2 839 31.0
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 7.2e-85 319.3 694 32.9
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.1e-84 317.8 232 65.5
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 9.7e-82 308.9 704 31.2
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 8.2e-81 305.8 704 31.0
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 3.1e-80 303.9 775 29.3
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 2.0e-74 284.6 691 29.4
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 5.4e-72 276.6 207 63.8
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.5e-69 267.7 391 38.9
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.3e-65 255.4 186 65.6
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.6e-52 210.7 320 39.1
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 3.0e-46 191.0 219 47.9
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.4e-42 177.6 160 51.2
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.0e-38 164.5 146 54.8
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.5e-34 152.1 146 52.7
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-33 149.1 131 54.2
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.7e-31 141.4 207 38.6
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 6.0e-31 140.2 89 69.7
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.2e-28 132.5 191 40.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.4e-27 129.0 109 56.0
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 8.4e-25 119.8 309 27.2
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 5.4e-24 117.1 198 41.9
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-23 115.9 133 48.1
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.0e-19 99.8 249 28.5
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.4e-16 90.5 59 66.1
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 2.5e-13 81.6 46 69.6
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 6.2e-12 77.0 43 69.8
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.1e-08 63.5 67 50.7
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.6e-07 62.4 76 46.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 2.1e-07 62.0 98 38.8
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 6.0e-07 60.5 381 22.6


User provided reference genes

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