Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 7.7e-236 820.1 409 100.0
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 7.9e-156 554.3 404 70.5
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 2.6e-143 512.7 437 63.6
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 2.7e-140 502.7 419 64.7
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 9.7e-138 494.2 443 61.9
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 2.2e-137 493.0 432 61.6
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 2.2e-137 493.0 417 63.1
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 2.8e-137 492.7 427 62.3
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.0e-134 484.2 405 63.5
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 3.8e-134 482.3 433 61.4
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 6.5e-134 481.5 421 62.9
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 1.1e-133 480.7 426 62.0
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 2.5e-133 479.6 424 59.9
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 2.1e-132 476.5 428 61.2
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 3.6e-132 475.7 429 60.4
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 6.1e-132 474.9 340 70.0
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 3.9e-131 472.2 429 61.1
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 2.0e-130 469.9 432 59.7
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 5.7e-130 468.4 421 60.3
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 7.4e-130 468.0 394 65.5
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 7.4e-130 468.0 419 60.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 9.7e-130 467.6 422 60.7
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 9.7e-130 467.6 422 60.7
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 1.7e-129 466.8 427 60.0
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 2.2e-129 466.5 420 58.3
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.7e-129 465.7 420 60.2
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 4.8e-129 465.3 427 58.1
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 6.3e-129 464.9 443 58.5
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 4.1e-128 462.2 431 60.1
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 9.1e-128 461.1 382 64.9
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 9.1e-128 461.1 430 60.2
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 1.5e-127 460.3 431 58.5
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 2.0e-127 459.9 425 58.8
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 7.7e-127 458.0 377 62.3
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 1.3e-126 457.2 433 58.0
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 1.3e-126 457.2 427 60.0
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.7e-126 456.8 431 58.9
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 2.2e-126 456.4 373 64.1
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 2.9e-126 456.1 377 62.1
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 8.5e-126 454.5 420 58.8
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 3.2e-125 452.6 379 61.5
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.2e-125 452.2 421 57.5
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 5.5e-125 451.8 415 58.8
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 7.2e-125 451.4 419 58.7
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 4.7e-124 448.7 378 61.9
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 7.9e-124 448.0 421 58.7
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 7.9e-124 448.0 374 62.6
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 1.0e-123 447.6 423 59.6
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.8e-123 446.8 386 60.4
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 6.7e-123 444.9 427 57.1
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.1e-122 444.1 420 58.1
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 3.3e-122 442.6 398 59.0
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 5.7e-122 441.8 410 58.0
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 2.8e-121 439.5 421 57.2
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 5.3e-120 435.3 405 58.5
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 2.9e-118 429.5 414 57.0
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 3.2e-117 426.0 393 57.0
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 2.3e-115 419.9 424 54.5
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 6.7e-115 418.3 426 56.3
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 6.7e-115 418.3 415 55.9
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.6e-114 416.4 318 67.3
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 2.6e-114 416.4 399 57.4
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.3e-114 416.0 318 67.3
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 2.2e-113 413.3 428 54.9
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 2.8e-113 412.9 428 54.7
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 2.4e-112 409.8 323 62.8
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.6e-111 406.4 296 69.3
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 2.6e-111 406.4 417 55.4
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 4.5e-111 405.6 383 58.7
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 3.6e-108 396.0 426 53.1
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 3.6e-108 396.0 379 56.7
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 6.1e-108 395.2 377 56.2
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 2.3e-107 393.3 420 53.1
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 2.6e-106 389.8 372 55.9
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 1.4e-104 384.0 423 53.7
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 9.4e-101 371.3 425 51.1
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 1.3e-89 334.3 254 68.9
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 7.0e-88 328.6 285 61.8
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 4.5e-87 325.9 391 44.8
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 1.3e-86 324.3 288 57.6
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 6.0e-71 272.3 265 56.2
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.6e-68 264.2 255 57.6
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 8.9e-67 258.5 398 42.0
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 9.9e-66 255.0 451 38.6
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 8.3e-65 251.9 445 37.5
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 3.5e-55 219.9 212 56.1
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 1.2e-47 194.9 210 52.4
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 9.3e-40 168.7 165 55.2
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 6.0e-39 166.0 127 65.4
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 5.6e-37 159.5 150 60.0
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 2.1e-36 157.5 165 57.6
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 5.5e-16 89.7 251 29.5
MCO02G191 Micromonas commoda HOM05D007414 ORTHO05D009482 1.4e-14 85.1 292 28.1
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 1.5e-13 81.6 75 50.7
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-12 78.2 377 25.5
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.2e-12 77.8 381 24.1
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 2.2e-12 77.8 383 24.5
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.8e-12 77.4 412 25.2
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 3.7e-12 77.0 379 24.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 6.3e-12 76.3 412 25.2
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 8.2e-12 75.9 262 28.2
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.1e-11 75.5 385 24.7
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.4e-11 75.1 384 24.5
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.8e-11 74.7 378 25.1
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 3.1e-11 73.9 399 24.8
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.1e-11 73.9 273 28.2
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 5.3e-11 73.2 427 24.4
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 5.3e-11 73.2 379 24.5
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 5.3e-11 73.2 267 26.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 5.3e-11 73.2 267 26.6
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.3e-11 73.2 414 25.6
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 6.9e-11 72.8 268 28.0
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 6.9e-11 72.8 420 24.3
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.1e-11 72.4 429 23.8
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.2e-10 72.0 382 23.6
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.5e-10 71.6 389 25.4
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.0e-10 71.2 257 27.2
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 2.0e-10 71.2 329 25.8
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 2.0e-10 71.2 442 23.5
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.0e-10 71.2 392 23.7
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.0e-10 71.2 268 26.9
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 2.0e-10 71.2 384 24.2
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.6e-10 70.9 350 24.3
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.6e-10 70.9 401 24.4
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.6e-10 70.9 418 24.4
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.6e-10 70.9 382 23.6
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.6e-10 70.9 394 25.1
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.4e-10 70.5 274 27.4
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.4e-10 70.5 402 23.6
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.4e-10 70.5 270 27.8
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 5.9e-10 69.7 389 22.6
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.7e-10 69.3 388 23.7
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.7e-10 69.3 388 23.7
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.0e-09 68.9 379 24.3
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.0e-09 68.9 259 26.3
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.3e-09 68.6 267 26.6
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.3e-09 68.6 389 22.9
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.3e-09 68.6 267 27.0
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.7e-09 68.2 417 23.0
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.7e-09 68.2 408 23.8
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.7e-09 68.2 272 26.8
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 1.7e-09 68.2 267 25.8
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.9e-09 67.4 267 27.7
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 2.9e-09 67.4 272 26.8
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.9e-09 67.4 259 26.6
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 3.8e-09 67.0 266 25.2
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 3.8e-09 67.0 263 25.5
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 3.8e-09 67.0 382 23.3
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.0e-09 66.6 270 26.7
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 5.0e-09 66.6 68 48.5
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 5.0e-09 66.6 275 28.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 6.5e-09 66.2 261 27.6
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.5e-09 66.2 273 25.6
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 8.5e-09 65.9 267 27.0
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 8.5e-09 65.9 270 27.0
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 8.5e-09 65.9 273 26.0
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.1e-08 65.5 268 27.6
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.1e-08 65.5 270 25.9
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.4e-08 65.1 270 26.3
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.4e-08 65.1 273 25.6
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.4e-08 65.1 304 26.3
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.9e-08 64.7 263 25.5
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.5e-08 64.3 270 26.3
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 2.5e-08 64.3 420 23.6
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 3.2e-08 63.9 259 25.5
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.2e-08 63.9 270 26.3
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 3.2e-08 63.9 267 27.7
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 4.2e-08 63.5 46 60.9
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 5.5e-08 63.2 256 26.2
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 7.2e-08 62.8 270 24.8
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 1.2e-07 62.0 263 26.2
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.6e-07 61.6 270 25.6
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 2.1e-07 61.2 279 25.8
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.1e-07 61.2 360 22.8
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 2.1e-07 61.2 282 25.9
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 6.1e-07 59.7 277 24.9
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.0e-06 58.9 251 25.9
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 1.0e-06 58.9 252 26.2
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.4e-06 58.5 286 24.5
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.8e-06 58.2 256 26.6
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 3.9e-06 57.0 425 23.8
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 5.1e-06 56.6 294 24.8
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 6.7e-06 56.2 251 25.9
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 6.7e-06 56.2 252 25.8


User provided reference genes

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