Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 2.0e-53 212.2 112 100.0
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.1e-30 136.7 78 88.5
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.1e-30 136.7 78 89.7
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 1.1e-30 136.7 78 87.2
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 1.4e-30 136.3 78 87.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.4e-30 136.3 78 88.5
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 3.1e-30 135.2 79 86.1
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.9e-30 134.0 78 87.2
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 6.9e-30 134.0 78 87.2
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 9.1e-30 133.7 78 89.7
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 9.1e-30 133.7 78 87.2
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 9.1e-30 133.7 78 87.2
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.5e-29 132.9 78 85.9
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.0e-29 132.5 78 88.5
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 2.6e-29 132.1 78 85.9
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.6e-29 132.1 78 85.9
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.5e-29 131.3 79 82.3
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 4.5e-29 131.3 78 85.9
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 4.5e-29 131.3 78 85.9
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.0e-28 130.2 78 85.9
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 1.0e-28 130.2 78 84.6
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 1.3e-28 129.8 79 86.1
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-28 129.8 79 81.0
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.7e-28 129.4 78 83.3
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.7e-28 129.4 78 84.6
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 2.2e-28 129.0 78 83.3
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 2.2e-28 129.0 78 83.3
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.9e-28 128.6 79 81.0
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.8e-28 128.3 78 83.3
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 3.8e-28 128.3 78 84.6
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 5.0e-28 127.9 78 83.3
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 8.5e-28 127.1 78 83.3
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.4e-27 126.3 78 80.8
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.4e-27 126.3 78 80.8
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.4e-27 126.3 78 83.3
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.9e-27 125.9 78 80.8
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-27 125.6 79 79.7
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-27 125.6 79 79.7
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.5e-27 125.6 78 80.8
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.5e-27 125.6 78 80.8
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 3.2e-27 125.2 78 79.5
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.2e-27 125.2 78 80.8
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 3.2e-27 125.2 78 79.5
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 4.2e-27 124.8 78 80.8
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 4.2e-27 124.8 78 82.1
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 4.2e-27 124.8 99 66.7
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.2e-27 124.8 78 80.8
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 4.2e-27 124.8 78 78.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 5.5e-27 124.4 78 79.5
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 9.4e-27 123.6 78 80.8
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.1e-26 122.5 74 82.4
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 2.7e-26 122.1 78 78.2
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.6e-26 121.7 77 79.2
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.6e-26 121.7 78 79.5
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 4.7e-26 121.3 78 80.8
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 4.7e-26 121.3 78 78.2
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 8.0e-26 120.6 78 78.2
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.0e-25 120.2 78 80.8
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.4e-25 119.8 78 75.6
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.4e-25 119.8 78 76.9
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.4e-25 119.8 78 73.1
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.4e-25 119.8 78 78.2
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.8e-25 119.4 78 78.2
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.8e-25 119.4 78 78.2
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.3e-25 119.0 73 83.6
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.0e-25 118.6 79 78.5
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 3.0e-25 118.6 78 75.6
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 3.0e-25 118.6 78 82.1
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 6.7e-25 117.5 75 78.7
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 1.1e-24 116.7 78 75.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.5e-24 116.3 78 74.4
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.5e-24 116.3 78 75.6
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 2.0e-24 115.9 78 76.9
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 2.0e-24 115.9 78 76.9
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 2.0e-24 115.9 78 75.6
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 75.6
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 75.6
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.6e-24 115.5 78 74.4
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 4.4e-24 114.8 79 75.9
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 7.4e-24 114.0 78 73.1
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 7.4e-24 114.0 76 75.0
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.3e-23 113.2 78 74.4
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.3e-23 113.2 74 75.7
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.3e-23 113.2 85 70.6
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 2.2e-23 112.5 75 74.7
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.2e-23 112.5 78 74.4
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.7e-23 111.7 78 70.5
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 6.3e-23 110.9 78 70.5
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 8.2e-23 110.5 79 70.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.1e-22 110.2 78 70.5
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 1.8e-22 109.4 78 69.2
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 2.4e-22 109.0 89 64.0
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 2.4e-22 109.0 78 70.5
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 3.1e-22 108.6 78 69.2
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 5.3e-22 107.8 81 65.4
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 5.3e-22 107.8 78 70.5
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 5.3e-22 107.8 78 70.5
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 7.0e-22 107.5 87 64.4
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.2e-21 106.7 78 66.7
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.6e-21 106.3 79 68.4
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.6e-21 106.3 79 68.4
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.6e-21 106.3 79 70.9
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.6e-21 106.3 79 68.4
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.0e-21 105.9 78 66.7
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 2.6e-21 105.5 78 66.7
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 3.5e-21 105.1 79 68.4
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 3.5e-21 105.1 113 54.0
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 3.5e-21 105.1 78 66.7
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 4.5e-21 104.8 79 68.4
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.5e-21 104.8 79 68.4
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.5e-21 104.8 79 68.4
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.5e-21 104.8 78 65.4
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.5e-21 104.8 79 68.4
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.5e-21 104.8 78 66.7
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 4.5e-21 104.8 78 67.9
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 5.9e-21 104.4 79 67.1
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 5.9e-21 104.4 79 67.1
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 5.9e-21 104.4 79 67.1
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 5.9e-21 104.4 78 67.9
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 5.9e-21 104.4 78 66.7
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.0e-20 103.6 79 67.1
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.0e-20 103.6 79 67.1
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.7e-20 102.8 79 67.1
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.7e-20 102.8 79 67.1
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 1.7e-20 102.8 79 68.4
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.7e-20 102.8 78 66.7
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.7e-20 102.8 79 62.0
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.7e-20 102.8 78 66.7
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.2e-20 102.4 79 65.8
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 2.2e-20 102.4 78 65.4
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 2.2e-20 102.4 78 66.7
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 2.9e-20 102.1 79 65.8
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 2.9e-20 102.1 78 61.5
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 2.9e-20 102.1 67 77.6
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.8e-20 101.7 79 64.6
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 5.0e-20 101.3 78 59.0
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 6.5e-20 100.9 78 61.5
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 8.5e-20 100.5 79 65.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 8.5e-20 100.5 78 62.8
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.5e-19 99.8 77 62.3
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.5e-19 99.8 75 65.3
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.9e-19 99.4 78 64.1
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-19 99.4 52 90.4
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-19 99.4 52 90.4
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.5e-19 99.0 79 63.3
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 3.2e-19 98.6 79 60.8
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.2e-19 98.6 78 62.8
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 4.2e-19 98.2 78 66.7
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 7.2e-19 97.4 78 60.3
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.2e-18 96.7 78 66.7
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-18 96.7 70 64.3
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 2.1e-18 95.9 79 59.5
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 2.7e-18 95.5 77 62.3
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.0e-17 93.6 80 58.8
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 1.8e-17 92.8 78 57.7
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.3e-17 92.4 54 83.3
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 2.6e-16 89.0 78 57.7
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 2.6e-16 89.0 76 57.9
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 4.4e-16 88.2 52 80.8
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 7.5e-16 87.4 78 61.5
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 2.2e-15 85.9 62 67.7
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.2e-15 85.9 72 65.3
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 2.2e-15 85.9 76 53.9
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 3.7e-15 85.1 78 56.4
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 6.3e-15 84.3 77 54.5
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 8.2e-15 84.0 78 55.1
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.1e-14 83.6 69 59.4
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.6e-13 79.7 41 92.7
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 7.7e-13 77.4 39 94.9
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 2.1e-10 69.3 50 60.0
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.6e-10 68.6 46 69.6
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.3e-09 65.9 73 52.1
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 2.3e-09 65.9 78 48.7
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 3.0e-09 65.5 80 48.8
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 4.0e-09 65.1 35 82.9
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 8.8e-09 63.9 80 48.8
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.4e-06 55.8 49 61.2


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