Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006400 Simmondsia chinensis HOM05D006191 ORTHO05D007660 1.3e-27 125.9 75 100.0
CSS0014439 Camellia sinensis var. sinensis HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
MELO3C014567.2 Cucumis melo HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
CsaV3_6G039080 Cucumis sativus L. HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Duzib106G0217 Durio zibethinus HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Duzib128G0357 Durio zibethinus HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Gohir.A10G183900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Gohir.D10G191200 Gossypium hirsutum HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Gorai.011G214000 Gossypium raimondii HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
TAR623G0607 Trochodendron aralioides HOM05D006191 ORTHO05D007660 9.1e-26 119.8 75 96.0
Oeu030629.1 Olea europaea HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 93.3
Potri.009G071900 Populus trichocarpa HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 94.7
Sabra09G0054200 Salix brachista HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 94.7
Sopen11g024870 Solanum pennellii HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 94.7
PGSC0003DMG400031241 Solanum tuberosum HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 94.7
GSVIVG01037255001 Vitis vinifera HOM05D006191 ORTHO05D007660 1.2e-25 119.4 75 94.7
CiPaw.14G114100 Carya illinoinensis HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 94.7
Potri.001G277100 Populus trichocarpa HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 93.3
QL01p017491 Quercus lobata HOM05D006191 ORTHO05D007660 1.5e-25 119.0 74 94.6
Sed0001199 Sechium edule HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 94.7
THA.LOC104819131 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 94.7
TWI38G0245 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 93.3
TWI63G0884 Tripterygium wilfordii HOM05D006191 ORTHO05D007660 1.5e-25 119.0 75 93.3
Hma1.2p1_0115F.1_g055930 Hydrangea macrophylla HOM05D006191 ORTHO05D007660 2.0e-25 118.6 75 93.3
Sopen12g034350 Solanum pennellii HOM05D006191 ORTHO05D007660 2.0e-25 118.6 75 93.3
Lsat_1_v5_gn_2_33900 Lactuca sativa HOM05D006191 ORTHO05D007660 2.6e-25 118.2 75 92.0
MBI13_g01622_MAGBIO Magnolia biondii HOM05D006191 ORTHO05D007660 2.6e-25 118.2 75 93.3
Gohir.D13G004600 Gossypium hirsutum HOM05D006191 ORTHO05D007660 3.5e-25 117.9 75 94.7
Manes.01G180500 Manihot esculenta HOM05D006191 ORTHO05D007660 3.5e-25 117.9 75 94.7
Dinv05064 Davidia involucrata HOM05D006191 ORTHO05D007660 4.5e-25 117.5 75 92.0
Peaxi162Scf00004g04011 Petunia axillaris HOM05D006191 ORTHO05D007660 4.5e-25 117.5 75 92.0
THA.LOC104825593 Tarenaya hassleriana HOM05D006191 ORTHO05D007660 4.5e-25 117.5 75 93.3
Thecc.10G162100 Theobroma cacao HOM05D006191 ORTHO05D007660 4.5e-25 117.5 75 92.0
Atru.chr12.1349 Acer truncatum HOM05D006191 ORTHO05D007660 5.9e-25 117.1 75 92.0
EL10Ac2g02816 Beta vulgaris HOM05D006191 ORTHO05D007660 5.9e-25 117.1 75 89.3
Cpa.g.sc3.359 Carica papaya HOM05D006191 ORTHO05D007660 5.9e-25 117.1 75 93.3
COL.COLO4_04799 Corchorus olitorius HOM05D006191 ORTHO05D007660 5.9e-25 117.1 75 92.0
Oeu001494.1 Olea europaea HOM05D006191 ORTHO05D007660 5.9e-25 117.1 75 92.0
CAN.G484.24 Capsicum annuum HOM05D006191 ORTHO05D007660 7.7e-25 116.7 75 92.0
Potri.003G197801 Populus trichocarpa HOM05D006191 ORTHO05D007660 7.7e-25 116.7 75 92.0
Potri.T125106 Populus trichocarpa HOM05D006191 ORTHO05D007660 7.7e-25 116.7 75 92.0
HanXRQChr06g0182571 Helianthus annuus HOM05D006191 ORTHO05D007660 1.0e-24 116.3 75 90.7
Nitab4.5_0004018g0100 Nicotiana tabacum HOM05D006191 ORTHO05D007660 1.0e-24 116.3 75 90.7
TPR.G8494 Trifolium pratense HOM05D006191 ORTHO05D007660 1.0e-24 116.3 75 92.0
Aa31LG5G18460 Aethionema arabicum HOM05D006191 ORTHO05D007660 1.3e-24 115.9 75 90.7
Eucgr.J01186 Eucalyptus grandis HOM05D006191 ORTHO05D007660 1.3e-24 115.9 75 92.0
Gorai.013G005000 Gossypium raimondii HOM05D006191 ORTHO05D007660 1.3e-24 115.9 75 93.3
CAN.G1850.1 Capsicum annuum HOM05D006191 ORTHO05D007660 1.7e-24 115.5 75 92.0
DCAR_002114 Daucus carota HOM05D006191 ORTHO05D007660 1.7e-24 115.5 75 89.3
Thhalv10021870m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 1.7e-24 115.5 75 89.3
CDE02G2705 Ceratophyllum demersum HOM05D006191 ORTHO05D007660 2.2e-24 115.2 75 86.7
PGR031G0246 Punica granatum HOM05D006191 ORTHO05D007660 2.2e-24 115.2 75 90.7
Thhalv10022475m.g Eutrema salsugineum HOM05D006191 ORTHO05D007660 2.9e-24 114.8 75 88.0
Glyma.08G302200 Glycine max HOM05D006191 ORTHO05D007660 2.9e-24 114.8 75 90.7
Lalb_Chr07g0183161 Lupinus albus HOM05D006191 ORTHO05D007660 2.9e-24 114.8 75 90.7
Medtr3g434780 Medicago truncatula HOM05D006191 ORTHO05D007660 2.9e-24 114.8 75 90.7
Duzib114G0719 Durio zibethinus HOM05D006191 ORTHO05D007660 5.0e-24 114.0 75 90.7
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05D006191 ORTHO05D007660 6.5e-24 113.6 75 86.7
CANSAT54G1797 Cannabis sativa HOM05D006191 ORTHO05D007660 6.5e-24 113.6 75 90.7
Migut.D00650 Erythranthe guttata HOM05D006191 ORTHO05D007660 1.4e-23 112.5 75 86.7
Nn2g14883 Nelumbo nucifera HOM05D006191 ORTHO05D007660 1.4e-23 112.5 75 88.0
Nn7g36644 Nelumbo nucifera HOM05D000965 ORTHO05D000842 1.4e-23 112.5 75 88.0
CARHR082640 Cardamine hirsuta HOM05D006191 ORTHO05D007660 1.9e-23 112.1 75 85.3
Ciclev10017371m.g Citrus clementina HOM05D006191 ORTHO05D007660 1.9e-23 112.1 76 90.8
Mapoly0046s0044 Marchantia polymorpha HOM05D006191 ORTHO05D007660 3.2e-23 111.3 75 90.7
Sabra16G0171200 Salix brachista HOM05D006191 ORTHO05D007660 3.2e-23 111.3 78 87.2
Atru.chr3.2798 Acer truncatum HOM05D006191 ORTHO05D007660 7.2e-23 110.2 71 91.5
Solyc12g099705.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 7.2e-23 110.2 75 88.0
HPP92_025477 Vanilla planifolia HOM05D006191 ORTHO05D007660 7.2e-23 110.2 75 86.7
Lj6g0026433 Lotus japonicus HOM05D006191 ORTHO05D007660 9.4e-23 109.8 75 85.3
PSO339G4970 Papaver somniferum HOM05D006191 ORTHO05D007660 1.2e-22 109.4 75 88.0
PSO384G4772 Papaver somniferum HOM05D006191 ORTHO05D007660 1.2e-22 109.4 75 88.0
Carub.0003s0749 Capsella rubella HOM05D006191 ORTHO05D007660 2.1e-22 108.6 72 87.5
Cc01_g05600 Coffea canephora HOM05D006191 ORTHO05D007660 3.6e-22 107.8 72 87.5
AT3G07910 Arabidopsis thaliana HOM05D006191 ORTHO05D007660 6.1e-22 107.1 75 82.7
Actinidia23986 Actinidia chinensis HOM05D006191 ORTHO05D007660 8.0e-22 106.7 69 94.2
Glyma.18G117700 Glycine max HOM05D006191 ORTHO05D007660 1.4e-21 105.9 71 90.1
A05p40330 Brassica napus HOM05D006191 ORTHO05D007660 2.3e-21 105.1 73 86.3
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 3.0e-21 104.8 75 85.3
ECA238G0093 Erigeron canadensis HOM05D006191 ORTHO05D007660 5.2e-21 104.0 75 81.3
C05p59410 Brassica napus HOM05D006191 ORTHO05D007660 8.8e-21 103.2 73 83.6
BolC5t34598H Brassica oleracea HOM05D006191 ORTHO05D007660 8.8e-21 103.2 73 83.6
Gohir.A13G004900 Gossypium hirsutum HOM05D006191 ORTHO05D007660 2.0e-20 102.1 82 82.9
Solyc11g150142.1 Solanum lycopersicum HOM05D006191 ORTHO05D007660 2.0e-20 102.1 69 84.1
BcaB04g21265 Brassica carinata HOM05D006191 ORTHO05D007660 2.6e-20 101.7 74 82.4
BcaC05g29581 Brassica carinata HOM05D006191 ORTHO05D007660 4.4e-20 100.9 73 80.8
A03p35550 Brassica napus HOM05D006191 ORTHO05D007660 7.4e-20 100.1 72 83.3
C03p43190 Brassica napus HOM05D006191 ORTHO05D007660 7.4e-20 100.1 72 83.3
BolC3t16588H Brassica oleracea HOM05D006191 ORTHO05D007660 7.4e-20 100.1 72 83.3
BraA03t12731Z Brassica rapa HOM05D006191 ORTHO05D007660 7.4e-20 100.1 72 83.3
RcHm_v2.0_Chr5g0050711 Rosa chinensis HOM05D006191 ORTHO05D007660 7.4e-20 100.1 75 74.7
FvH4_3g28030 Fragaria vesca HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 73.3
FAN16G3748 Fragaria x ananassa HOM05D006191 ORTHO05D007660 9.7e-20 99.8 75 73.3
Sp3g06830 Schrenkiella parvula HOM05D006191 ORTHO05D007660 9.7e-20 99.8 69 84.1
FAN25G1591 Fragaria x ananassa HOM05D006191 ORTHO05D007660 2.2e-19 98.6 75 72.0
BcaC09g47957 Brassica carinata HOM05D006191 ORTHO05D007660 4.8e-19 97.4 73 80.8
BolC1t05519H Brassica oleracea HOM05D006191 ORTHO05D007660 4.8e-19 97.4 73 80.8
BraA01t04352Z Brassica rapa HOM05D006191 ORTHO05D007660 4.8e-19 97.4 73 80.8
SMO301G0059 Selaginella moellendorffii HOM05D006191 ORTHO05D007660 6.3e-19 97.1 72 80.6
ClCG02G022950 Citrullus lanatus HOM05D006191 ORTHO05D007660 1.1e-18 96.3 125 48.8
Pp3c9_12820 Physcomitrium patens HOM05D006191 ORTHO05D007660 1.1e-18 96.3 75 70.7
Cfa010050 Carpinus fangiana HOM05D000477 ORTHO05D000338 1.8e-18 95.5 67 88.1
Haze_23211 Corylus avellana HOM05D000001 ORTHO05D000003 1.8e-18 95.5 49 91.8
FAN21G2777 Fragaria x ananassa HOM05D006191 ORTHO05D007660 2.4e-18 95.1 72 72.2
Zm00001eb432230 Zea mays HOM05D006191 ORTHO05D007660 9.1e-18 93.2 70 82.9
MD00G1126200 Malus domestica HOM05D006191 ORTHO05D007660 2.6e-17 91.7 72 75.0
MD00G1154200 Malus domestica HOM05D006191 ORTHO05D007660 2.6e-17 91.7 72 75.0
Prupe.4G268400 Prunus persica HOM05D006191 ORTHO05D007660 4.5e-17 90.9 70 78.6
AUR62037186 Chenopodium quinoa HOM05D006191 ORTHO05D007660 5.9e-17 90.5 49 83.7
Pp3c15_6032 Physcomitrium patens HOM05D006191 ORTHO05D007660 5.9e-17 90.5 75 68.0
Lalb_Chr04g0264081 Lupinus albus HOM05D006191 ORTHO05D007660 5.0e-16 87.4 68 82.4
Lalb_Chr25g0282111 Lupinus albus HOM05D006191 ORTHO05D007660 5.0e-16 87.4 68 82.4
ATR0745G066 Amborella trichopoda HOM05D006191 ORTHO05D007660 8.5e-16 86.7 76 75.0
BcaC09g47961 Brassica carinata HOM05D006191 ORTHO05D007660 8.5e-16 86.7 64 81.2
Psat5g217760 Pisum sativum HOM05D006191 ORTHO05D007660 1.5e-15 85.9 68 80.9
Aqoxy2G00346 Aquilegia oxysepala HOM05D006191 ORTHO05D007660 2.5e-15 85.1 68 66.2
Glyma.04G138500 Glycine max HOM05D006191 ORTHO05D007660 2.5e-15 85.1 68 80.9
arahy.Tifrunner.gnm1.ann1.MB5P1Q Arachis hypogaea HOM05D006191 ORTHO05D007660 4.2e-15 84.3 68 80.9
TPR.G17809 Trifolium pratense HOM05D006191 ORTHO05D007660 5.5e-15 84.0 68 77.9
Phvul.005G027500 Phaseolus vulgaris HOM05D006191 ORTHO05D007660 7.2e-15 83.6 68 79.4
arahy.Tifrunner.gnm1.ann1.HDQ2FX Arachis hypogaea HOM05D006191 ORTHO05D007660 9.4e-15 83.2 68 79.4
Lj3g0010990 Lotus japonicus HOM05D006191 ORTHO05D007660 9.4e-15 83.2 68 77.9
Medtr3g017440 Medicago truncatula HOM05D006191 ORTHO05D007660 2.7e-14 81.6 68 77.9
Rhsim01G0194500 Rhododendron simsii HOM05D000189 ORTHO05D000474 1.8e-13 79.0 41 92.7
Zm00001eb068350 Zea mays HOM05D006191 ORTHO05D007660 4.0e-13 77.8 63 81.0
FAN11G1162 Fragaria x ananassa HOM05D006191 ORTHO05D007660 5.2e-13 77.4 117 47.0
MCO15G227 Micromonas commoda HOM05D006191 ORTHO05D007660 3.4e-12 74.7 67 61.2
Cre01.g010500 Chlamydomonas reinhardtii HOM05D006191 ORTHO05D007660 7.5e-12 73.6 69 47.8
PRCOL_00002293 Prasinoderma coloniale HOM05D006191 ORTHO05D007660 1.7e-11 72.4 72 48.6
TAR633G2362 Trochodendron aralioides HOM05D006191 ORTHO05D007660 1.7e-08 62.4 47 87.2
Dinv36184 Davidia involucrata HOM05D006191 ORTHO05D007660 5.0e-08 60.8 47 89.4
VMungo1080G0693 Vigna mungo HOM05D006191 ORTHO05D007660 5.0e-08 60.8 113 46.9
SalBow1G5107 Salvia bowleyana HOM05D006191 ORTHO05D007660 9.4e-07 56.6 45 64.4


User provided reference genes

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