Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.6e-68 261.9 134 100.0
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 7.6e-15 84.3 109 54.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.1e-13 80.5 140 43.6
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 5.4e-13 78.2 73 60.3
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.7e-12 75.9 108 43.5
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.5e-12 75.5 87 52.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 3.5e-12 75.5 111 49.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 4.6e-12 75.1 90 52.2
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.8e-12 74.3 62 61.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 7.8e-12 74.3 115 45.2
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.8e-12 74.3 108 42.6
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.0e-11 73.9 77 58.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.0e-11 73.9 93 49.5
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.3e-11 73.6 87 52.9
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.3e-11 73.6 87 52.9
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.7e-11 73.2 58 63.8
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-11 72.8 113 43.4
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 3.0e-11 72.4 98 51.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.6e-11 70.9 96 46.9
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-10 70.5 97 42.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.6e-10 68.2 127 41.7
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 9.6e-10 67.4 113 45.1
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.6e-10 67.4 72 52.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.6e-09 66.6 78 55.1
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.1e-09 66.2 110 43.6
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-09 65.9 78 53.8
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-09 65.9 78 53.8
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 3.6e-09 65.5 77 51.9
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.6e-09 65.5 77 51.9
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.6e-09 65.5 62 53.2
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.6e-09 65.5 62 53.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 4.7e-09 65.1 52 63.5
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 8.1e-09 64.3 58 62.1
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-08 63.5 98 42.9
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-08 63.5 92 45.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-08 63.2 50 60.0
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 1.8e-08 63.2 117 35.0
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.4e-08 62.8 104 44.2
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.1e-08 62.4 107 40.2
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 3.1e-08 62.4 91 48.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.1e-08 62.4 57 59.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 4.0e-08 62.0 96 42.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.2e-08 61.6 57 56.1
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 6.8e-08 61.2 48 64.6
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 8.9e-08 60.8 66 47.0
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 8.9e-08 60.8 53 62.3
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.2e-07 60.5 64 53.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.0e-07 59.7 110 40.9
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 2.0e-07 59.7 103 41.7
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 2.6e-07 59.3 107 41.1
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.4e-07 58.9 47 63.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.4e-07 58.9 47 63.8
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 4.4e-07 58.5 98 44.9
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.4e-07 58.5 102 39.2
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.8e-07 58.2 64 53.1
AUR62018028 Chenopodium quinoa HOM05D052726 ORTHO05D002992 7.6e-07 57.8 65 50.8
AUR62043733 Chenopodium quinoa HOM05D052726 ORTHO05D002992 7.6e-07 57.8 65 50.8
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.6e-07 57.8 55 56.4
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 9.9e-07 57.4 57 61.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 9.9e-07 57.4 108 37.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.3e-06 57.0 46 63.0
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.0 45 64.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.3e-06 57.0 47 61.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.3e-06 57.0 47 61.7
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.3e-06 57.0 52 55.8
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.7e-06 56.6 46 63.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.2e-06 56.2 108 35.2
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.2e-06 56.2 49 59.2
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.2e-06 56.2 95 42.1
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 2.2e-06 56.2 79 41.8
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.9e-06 55.8 48 60.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.9e-06 55.8 59 50.8
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 3.8e-06 55.5 52 59.6
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 3.8e-06 55.5 101 38.6
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.8e-06 55.5 67 44.8
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.9e-06 55.1 44 61.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 4.9e-06 55.1 44 68.2
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 4.9e-06 55.1 56 60.7
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 4.9e-06 55.1 90 43.3
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 8.4e-06 54.3 45 62.2
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 8.4e-06 54.3 46 58.7
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 8.4e-06 54.3 49 59.2
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 8.4e-06 54.3 55 54.5


User provided reference genes

Program Settings